Fish Single-cell RNA Database

GENE ID: ENSDARG00000005749

Symbol	Location	Gene type	Genome version	Species
cand2	22: 31045277 ~ 31060579 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000005749 (cand2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000103057	zfhx3	7: 68214935 ~ 68373495 (-)
ENSDARG00000035625	snrnp27	5: 13767743 ~ 13778726 (-)
ENSDARG00000077155	si:ch211-157p22.10	5: 69504910 ~ 69523816 (-)
ENSDARG00000071084	wipf1b	6: 10781146 ~ 10809546 (-)
ENSDARG00000019239	cul1a	2: 50229183 ~ 50272077 (-)
ENSDARG00000038967	cul3a	2: 47644041 ~ 47681454 (-)
ENSDARG00000033971	prrx1a	2: 23165250 ~ 23172708 (-)
ENSDARG00000069438	neurl1aa	1: 47701924 ~ 47771742 (-)
ENSDARG00000041592	dcun1d2b	1: 208181 ~ 214911 (-)
ENSDARG00000040838	dcun1d2a	9: 34938316 ~ 34945582 (-)
ENSDARG00000019753	kcnn3	16: 23598908 ~ 23719649 (+)
ENSDARG00000020777	cep85l	20: 41859277 ~ 41963921 (+)
ENSDARG00000086060	hmcn2	8: 32613680 ~ 32666257 (+)
ENSDARG00000052898	kcnk3b	17: 45454943 ~ 45459207 (+)
ENSDARG00000056209	myoz1a	13: 22264914 ~ 22278415 (+)
ENSDARG00000039411	cep68	13: 24421515 ~ 24429095 (-)
ENSDARG00000021885	cacul1	13: 50328815 ~ 50341004 (-)
ENSDARG00000100108	cul3b	15: 1765988 ~ 1795631 (+)
ENSDARG00000004260	cul5b	21: 22124736 ~ 22142972 (+)
ENSDARG00000014939	kcnn2	10: 17592273 ~ 17674345 (+)
ENSDARG00000075752	myo18aa	10: 36950773 ~ 37075361 (-)
ENSDARG00000007691	cul1b	24: 17364745 ~ 17400472 (-)
ENSDARG00000013965	cul2	24: 2283959 ~ 2343366 (-)
ENSDARG00000005749	cand2	22: 31045277 ~ 31060579 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000005749

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences