Fish Single-cell RNA Database

GENE ID: ENSDARG00000088923

Symbol	Location	Gene type	Genome version	Species
si:ch211-12h2.8	22: 25611415 ~ 25612680 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000088923 (si:ch211-12h2.8), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000076476	zgc:173770	4: 77132096 ~ 77135076 (-)
ENSDARG00000102892	h1m	5: 68326858 ~ 68333081 (-)
ENSDARG00000039828	zp3b	2: 6253246 ~ 6258796 (+)
ENSDARG00000038720	zp3f.1	2: 38282647 ~ 38284749 (-)
ENSDARG00000086859	qdprb2	1: 24382651 ~ 24385979 (+)
ENSDARG00000042063	si:ch211-145c1.1	9: 8288268 ~ 8314028 (-)
ENSDARG00000092090	si:ch211-125e6.12	9: 33216945 ~ 33218269 (+)
ENSDARG00000055415	zp2l1	9: 35631440 ~ 35633827 (-)
ENSDARG00000042129	zp3a.1	20: 33991801 ~ 33993698 (+)
ENSDARG00000042130	zp3a.2	20: 33987465 ~ 33989427 (+)
ENSDARG00000069251	zpax1	20: 43737022 ~ 43743700 (-)
ENSDARG00000019706	zar1	20: 23423814 ~ 23426339 (-)
ENSDARG00000105346	zp2.2	20: 54290356 ~ 54292173 (+)
ENSDARG00000089966	si:zfos-1505d6.3	20: 54299419 ~ 54301276 (+)
ENSDARG00000078917	zgc:195245	8: 23776570 ~ 23780402 (-)
ENSDARG00000114958	zp3	17: 2580541 ~ 2584423 (-)
ENSDARG00000115457	zp3.2	17: 2587132 ~ 2590222 (-)
ENSDARG00000074289	tuba4l	13: 6245219 ~ 6252514 (-)
ENSDARG00000099060	zgc:111868	12: 42364157 ~ 42368296 (-)
ENSDARG00000092498	si:dkeyp-46h3.2	19: 27586823 ~ 27588842 (-)
ENSDARG00000006580	cldnd	21: 25777425 ~ 25778201 (+)
ENSDARG00000094392	si:dkey-229d11.5	21: 43644573 ~ 43666481 (-)
ENSDARG00000027639	zgc:165539	10: 21541925 ~ 21545117 (-)
ENSDARG00000027169	kpna7	10: 25214270 ~ 25217347 (-)
ENSDARG00000071583	gtf3ab	24: 21640635 ~ 21642858 (+)
ENSDARG00000092885	zgc:171977	24: 9976212 ~ 9985019 (-)
ENSDARG00000092924	zgc:171474	24: 10010630 ~ 10014624 (-)
ENSDARG00000088923	si:ch211-12h2.8	22: 25611415 ~ 25612680 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	NA	NA	NA
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA706197 (12hpf)	embryo	baseline	12hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	NA	NA	NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000088923

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences