Fish Single-cell RNA Database

GENE ID: ENSDARG00000071394

Symbol	Location	Gene type	Genome version	Species
foxq2	22: 20427170 ~ 20429374 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000071394 (foxq2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000041723	NA	5: 33018764 ~ 33022014 (-)
ENSDARG00000016301	zgc:65894	1: 56217388 ~ 56223913 (-)
ENSDARG00000040253	onecutl	16: 29521736 ~ 29528198 (-)
ENSDARG00000058008	six3a	13: 10258007 ~ 10261383 (-)
ENSDARG00000073944	si:ch73-386h18.1	18: 6039141 ~ 6083792 (+)
ENSDARG00000071426	lrrc59	12: 31775182 ~ 31812186 (+)
ENSDARG00000054879	six3b	12: 25600685 ~ 25603341 (+)
ENSDARG00000077092	elk4	11: 38470545 ~ 38492564 (-)
ENSDARG00000015156	fbln2	11: 27274355 ~ 27383732 (+)
ENSDARG00000104801	tubb6	24: 2941000 ~ 2947406 (-)
ENSDARG00000071394	foxq2	22: 20427170 ~ 20429374 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Blue cone opsin (cluster: 3)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000071394

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences