Fish Single-cell RNA Database

GENE ID: ENSDARG00000029457

Symbol	Location	Gene type	Genome version	Species
cacna1sa	22: 912450 ~ 968484 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000029457 (cacna1sa), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000043010	camk2d1	7: 57725708 ~ 57880131 (+)
ENSDARG00000099045	cacnb2a	7: 71792290 ~ 71837265 (-)
ENSDARG00000024141	cav3	6: 41996066 ~ 42003780 (-)
ENSDARG00000003754	tspan2a	6: 49107048 ~ 49159207 (-)
ENSDARG00000011023	pdlim3a	1: 17721853 ~ 17735861 (-)
ENSDARG00000098883	stac3	9: 307863 ~ 321351 (+)
ENSDARG00000019990	cabp1a	8: 39890186 ~ 39952727 (-)
ENSDARG00000056774	gpr37l1b	8: 21265263 ~ 21268303 (-)
ENSDARG00000014248	pdlim3b	14: 29782508 ~ 29800107 (-)
ENSDARG00000033029	pkd1b	12: 21697540 ~ 21748008 (+)
ENSDARG00000077855	znrf2a	19: 1934433 ~ 1948236 (-)
ENSDARG00000113525	fgf12b	15: 45414883 ~ 45510977 (-)
ENSDARG00000059202	tspan2b	23: 423351 ~ 452365 (-)
ENSDARG00000076030	cacnb3b	23: 26946429 ~ 26959206 (+)
ENSDARG00000033411	cabp1b	10: 41409255 ~ 41450454 (-)
ENSDARG00000011422	ryr1a	10: 33406819 ~ 33540336 (+)
ENSDARG00000030250	dennd2db	22: 835728 ~ 856886 (+)
ENSDARG00000029457	cacna1sa	22: 912450 ~ 968484 (-)
ENSDARG00000044526	camk1ga	22: 1049367 ~ 1069407 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000029457

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences