Fish Single-cell RNA Database

GENE ID: ENSDARG00000102165

Symbol	Location	Gene type	Genome version	Species
sema6a	KN150518.1: 17591 ~ 40355 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000102165 (sema6a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000015278	plxnc1	4: 18281954 ~ 18315912 (-)
ENSDARG00000019328	plxna4	4: 15217929 ~ 15420452 (-)
ENSDARG00000094799	plxnb2a	4: 14481835 ~ 14624481 (-)
ENSDARG00000035163	tlcd5b	5: 58836354 ~ 58840971 (-)
ENSDARG00000036994	tbc1d16	3: 18437397 ~ 18502030 (+)
ENSDARG00000004305	vangl1	9: 33009284 ~ 33055440 (+)
ENSDARG00000002877	reps1	20: 39223235 ~ 39259880 (+)
ENSDARG00000055825	celsr3	8: 26125218 ~ 26212523 (+)
ENSDARG00000007172	plxna3	8: 9222684 ~ 9570511 (-)
ENSDARG00000086057	plxnd1	8: 54284961 ~ 54286201 (+)
ENSDARG00000035650	evla	17: 30897292 ~ 30975978 (-)
ENSDARG00000060569	tmem229b	17: 37624704 ~ 37649828 (+)
ENSDARG00000053744	dcdc2b	13: 33304187 ~ 33314758 (+)
ENSDARG00000068709	fam174b	18: 25003207 ~ 25009666 (+)
ENSDARG00000062880	cntn3a.1	23: 11669109 ~ 11861393 (+)
ENSDARG00000060372	plxna2	23: 32579495 ~ 33038423 (-)
ENSDARG00000053547	jakmip2	21: 43029708 ~ 43079161 (-)
ENSDARG00000037593	prickle2b	11: 19271557 ~ 19471758 (+)
ENSDARG00000017229	megf10	10: 16069987 ~ 16161040 (+)
ENSDARG00000102153	nrp1a	24: 1162325 ~ 1356668 (-)
ENSDARG00000102165	sema6a	KN150518.1: 17591 ~ 40355 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000102165

EXPRESSION

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