Fish Single-cell RNA Database

GENE ID: ENSDARG00000099481

Symbol	Location	Gene type	Genome version	Species
ttc8	KN149874.1: 11 ~ 3574 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000099481 (ttc8), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000112165	rabepk	5: 2693601 ~ 2709671 (+)
ENSDARG00000078135	mrc2	3: 19732173 ~ 19813526 (+)
ENSDARG00000078283	si:zfos-323e3.4	6: 124172 ~ 131401 (-)
ENSDARG00000032056	arl6	1: 34203817 ~ 34233938 (+)
ENSDARG00000039827	bbs5	9: 48284606 ~ 48296469 (-)
ENSDARG00000079217	bbs9	16: 6957582 ~ 7062949 (+)
ENSDARG00000069499	spag1b	16: 54633238 ~ 54640315 (-)
ENSDARG00000019961	znf513a	20: 19423823 ~ 19432766 (+)
ENSDARG00000093659	entpd5b	20: 54360268 ~ 54381034 (-)
ENSDARG00000075898	spata7	17: 2684992 ~ 2721464 (-)
ENSDARG00000062248	ptpn21	17: 2606697 ~ 2690083 (-)
ENSDARG00000070526	zc2hc1c	17: 50248152 ~ 50259782 (+)
ENSDARG00000053481	entpd5a	17: 45030407 ~ 45040813 (-)
ENSDARG00000043740	efcab11	17: 16423721 ~ 16533069 (+)
ENSDARG00000071012	ifit14	17: 23612616 ~ 23616626 (-)
ENSDARG00000053835	plekhh1	17: 37932433 ~ 38023273 (+)
ENSDARG00000059911	bbs7	14: 46375241 ~ 46395659 (-)
ENSDARG00000016112	bbs12	14: 1351214 ~ 1366544 (+)
ENSDARG00000011222	ccdc28b	13: 33282095 ~ 33293654 (+)
ENSDARG00000016139	mkks	13: 35472803 ~ 35481843 (+)
ENSDARG00000040851	plekhh2	13: 8847421 ~ 8892514 (-)
ENSDARG00000078947	sdccag8	13: 11073282 ~ 11166731 (+)
ENSDARG00000004643	cdhr1a	13: 29480010 ~ 29505946 (-)
ENSDARG00000041621	bbs2	18: 17516569 ~ 17531483 (-)
ENSDARG00000069515	bbs10	18: 7375923 ~ 7382059 (-)
ENSDARG00000075169	bbs1	21: 27464538 ~ 27481382 (+)
ENSDARG00000105010	lztfl1	24: 12133814 ~ 12253332 (+)
ENSDARG00000071046	bbip1	22: 29648854 ~ 29652356 (+)
ENSDARG00000063522	bbs4	25: 2668881 ~ 2702935 (+)
ENSDARG00000102505	trim32	KN149782.1: 29662 ~ 32060 (-)
ENSDARG00000099481	ttc8	KN149874.1: 11 ~ 3574 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000099481

EXPRESSION

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