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NOTE: search by id.

EXAMPLES:

species Danio rerio
tissue pituitary
cell type Erythroid cells
gene ENSDARG00000077809
il13
project GSE158142
dataset GSE158142 (20hpf)


  •  Japanese medaka
    (Oryzias latipes)
  •  mexican tetra
    (Astyanax mexicanus)
  •  Nile tilapia
    (Oreochromis niloticus)
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •    
  •  zig-zag eel
    (Mastacembelus armatus)


  •  Japanese medaka
    (Oryzias latipes)
  •  mexican tetra
    (Astyanax mexicanus)
  •  Nile tilapia
    (Oreochromis niloticus)
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •  zig-zag eel
    (Mastacembelus armatus)

CELL TYPE

  • The folded tree shows the cell types of the species covered by the FishSCT.
  • Click on the node of the fold tree to browse the details of the dataset with that cell type.
  • Check the dataset checkbox for dataset selection for multiple search and visualization.
  • If you only selects cell types and no genes, all marker genes of these cell types will be displayed.
  • Adaxial cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE106587 (WT) 12hpf, 6 somites, wild-type TLAB embryo embryo baseline GSE106587 Adaxial cells 14
      GSE158142 (12hpf) 12hpf, 6 somites, untreatment head baseline GSE158142 Adaxial cells 16
  • Amacrine cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE122680 (24hpf) 24hpf, WT, untreatment retina baseline GSE122680 Amacrine cells 7
      GSE122680 (3dpf) 3dpf, WT, untreatment retina baseline GSE122680 Amacrine cells 2
      GSE122680 (14dpf) 14dpf, WT, untreatment retina baseline GSE122680 Amacrine cells 1
      GSE122680 (2dpf) 2dpf, WT, untreatment retina baseline GSE122680 Amacrine cells 2
      GSE122680 (2dpf) 2dpf, WT, untreatment retina baseline GSE122680 Amacrine cells 10
      GSE122680 (2dpf) 2dpf, WT, untreatment retina baseline GSE122680 Amacrine cells 2
      GSE122680 (2dpf) 2dpf, WT, untreatment retina baseline GSE122680 Amacrine cells 10
  • Anterior-posterior cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE123241 (wild type) 5dpf, wild type during sensory hair cell regeneration, lateral line sensory neuromast baseline GSE123241 Anterior-posterior cells 3
      GSE123241 (fgf3 mutants) 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory neuromast regeneration GSE123241 Anterior-posterior cells 3
      GSE123241 (fgf3 siblings) 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory neuromast regeneration GSE123241 Anterior-posterior cells 3
  • Apelin expressing cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA415636 (heart, blood) adult, Zebrabow M, heart and blood heart, blood baseline PRJNA415636 Apelin expressing cells 10
  • Apoptosis
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA734348 (dome, control) 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) embryo baseline PRJNA734348 Apoptosis 8
  • Articular chondrocyte
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE151354 (wild type) 21dpf, wild type cartilage baseline GSE151354 Articular chondrocyte 4
      GSE151354 (wild type) 21dpf, wild type cartilage baseline GSE151354 Articular chondrocyte 6
      GSE151354 (nkx3.2 mutant) 21dpf, nkx3.2 mutant cartilage growth GSE151354 Articular chondrocyte 4
  • Astrocyte
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA672101 (nrl-KO) 5mpf, three retinas from nrl-KO zebrafsih retina growth PRJNA672101 Astrocyte 18
      PRJNA672101 (WT) 5mpf, three retinas from WT zebrafsih retina baseline PRJNA672101 Astrocyte 15
  • Axial mesoderm cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE158849 (labeled) 6hpf, WT, 4sUTP injected (labeled) embryo baseline GSE158849 Axial mesoderm cells 6
  • B cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA415636 (heart, blood) adult, Zebrabow M, heart and blood heart, blood baseline PRJNA415636 B cells 13
  • Basal cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA668529 (3d) 3mpf, intranasal 100ng r-Spike 3 days olfactory rosette disease PRJNA668529 Basal cells 2
      PRJNA668529 (3h) 3mpf, intranasal 100ng r-Spike 3 hours olfactory rosette disease PRJNA668529 Basal cells 4
      PRJNA668529 (control) 3mpf, intranasal PBS olfactory rosette baseline PRJNA668529 Basal cells 6

          Click this button, the page will display all cell type information of zebrafish.

  • Click the arrow to add the sample you choose.
  • Support manual input.
  • IDs are separated by  / .

Gene

  • Please fill in the gene ID in FishSCT for multiple search and visualization.
  • If you have symbol, you can quickly search for its ID in FishSCT.
  • Multiple symbols are supported, separated by any punctuation, blank character, or line break.
  • More symbol need more time.
  • If you only selects genes and no cell types, all marker information of these genes will be displayed.

  • Click the arrow to add the gene you choose.
  • Support manual input.
  • Support genes without symbol.
  • IDs are separated by space.


      

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