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  •  Stereo-seq or Visium
  •  ST
  •  Geo-seq
  •  Tomo-seq


  •  Stereo-seq or Visium
  •  ST
  •  Geo-seq
  •  Tomo-seq

Dataset

  • The folded tree shows the stages of samples in datasets covered by the FishSED.
  • Click on the node of the fold tree to browse the details of the dataset.
  • Check the dataset checkbox for dataset selection for expression profile visualization.
  • one-cell stage
    • Dataset ID Tissue / organ Experiment type Sample description Source dataset ID Project ID
      GSE158849 (embryo replicate1) embryo baseline one-cell stage, 0.3hpf, untreatment GSM4812175 GSE158849
      GSE158849 (embryo replicate2) embryo baseline one-cell stage, 0.3hpf, untreatment GSM4812176 GSE158849
      GSE158849 (embryo replicate3) embryo baseline one-cell stage, 0.3hpf, untreatment GSM4812177 GSE158849
  • shield stage
    • Dataset ID Tissue / organ Experiment type Sample description Source dataset ID Project ID
      GSE59873 (shield, A to V) embryo baseline shield stage, intact embryo, sectioned from animal to vegetal pole GSM1448795 GSE59873
      GSE59873 (shield, V to A) embryo baseline shield stage, intact embryo, sectioned from vegetal to animal pole GSM1448796 GSE59873
      GSE59873 (shield, V to A, replicate) embryo baseline shield stage, intact embryo, sectioned from vegetal to animal pole, replicate GSM1448797 GSE59873
      GSE59873 (shield, L to R) embryo baseline shield stage, intact embryo, sectioned from left to right GSM1448798 GSE59873
      GSE59873 (shield, R to L) embryo baseline shield stage, intact embryo, sectioned from right to left GSM1448799 GSE59873
      GSE59873 (shield, V to D) embryo baseline shield stage, intact embryo, sectioned from ventral to dorsal end GSM1448800 GSE59873
      GSE59873 (shield, D to V) embryo baseline shield stage, intact embryo, sectioned from dorsal to ventral end GSM1448801 GSE59873
      GSE59873 (shield, D to V, replicate) embryo baseline shield stage, intact embryo, sectioned from dorsal to ventral end, replicate GSM1448802 GSE59873
  • 10 somite stage
    • Dataset ID Tissue / organ Experiment type Sample description Source dataset ID Project ID
      GSE59873 (10 somite, A to P) embryo baseline 10 somite stage, intact embryo, sectioned from anterior to posterior end GSM1448803 GSE59873
      GSE59873 (10 somite, A to P, replicate) embryo baseline 10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate GSM1448804 GSE59873
      GSE59873 (10 somite, P to A) embryo baseline 10 somite stage, intact embryo, sectioned from posterior to anterior end GSM1448805 GSE59873
      GSE59873 (10 somite, V to D) embryo baseline 10 somite stage, intact embryo, sectioned from ventral to dorsal end GSM1448806 GSE59873
      GSE59873 (10 somite, D to V) embryo baseline 10 somite stage, intact embryo, sectioned from dorsal to ventral end GSM1448807 GSE59873
      GSE59873 (10 somite, L to R) embryo baseline 10 somite stage, intact embryo, sectioned from left to right GSM1448808 GSE59873
      GSE59873 (10 somite, R to L) embryo baseline 10 somite stage, intact embryo, sectioned from right to left GSM1448809 GSE59873
  • 15 somite stage
    • Dataset ID Tissue / organ Experiment type Sample description Source dataset ID Project ID
      GSE59873 (15 somite, A to P) embryo baseline 15 somite stage, intact embryo, sectioned from anterior to posterior end GSM1448810 GSE59873
      GSE59873 (15 somite, P to A) embryo baseline 15 somite stage, intact embryo, sectioned from posterior to anterior end GSM1448811 GSE59873
      GSE59873 (15 somite, V to D) embryo baseline 15 somite stage, intact embryo, sectioned from ventral to dorsal end GSM1448812 GSE59873
      GSE59873 (15 somite, D to V) embryo baseline 15 somite stage, intact embryo, sectioned from dorsal to ventral end GSM1448813 GSE59873
      GSE59873 (15 somite, L to R) embryo baseline 15 somite stage, intact embryo, sectioned from left to right GSM1448814 GSE59873
      GSE59873 (15 somite, R to L) embryo baseline 15 somite stage, intact embryo, sectioned from right to left GSM1448815 GSE59873
      GSE59873 (15 somite, H to T) embryo baseline 15 somite stage, deyolked embryo, straightened, sectioned head to tail GSM1448816 GSE59873
      GSE59873 (15 somite, T to H) embryo baseline 15 somite stage, deyolked embryo, straightened, sectioned tail to head GSM1448817 GSE59873
      GSE59873 (15 somite, T to H, replicate) embryo baseline 15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate GSM1448819 GSE59873
  • 18 somite stage
    • Dataset ID Tissue / organ Experiment type Sample description Source dataset ID Project ID
      GSE59873 (18 somite, T to H) embryo baseline 18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head GSM1448820 GSE59873
  • late embryo
    • Dataset ID Tissue / organ Experiment type Sample description Source dataset ID Project ID
      GSE104057 (heart replicate1) heart baseline late embryo, 2dpf, isolated embryonic heart GSM2788518 GSE104057
      GSE104057 (heart replicate2) heart baseline late embryo, 2dpf, isolated embryonic heart GSM2788519 GSE104057
      GSE104057 (heart replicate3) heart baseline late embryo, 2dpf, isolated embryonic heart GSM2788520 GSE104057
      GSE128350 (1.67dpf whole embryo replicate1) embryo baseline late embryo, 1.67dpf, whole embryo, untreatment GSM3672145 GSE128350
      GSE128350 (1.17dpf whole embryo replicate1) embryo baseline late embryo, 1.17dpf, whole embryo, untreatment GSM3672146 GSE128350
      GSE128350 (1.17dpf whole embryo replicate2) embryo baseline late embryo, 1.17dpf, whole embryo, untreatment GSM3672147 GSE128350
      GSE128350 (1.17dpf trunk) embryo baseline late embryo, 1.17dpf, trunk, untreatment GSM3672148 GSE128350
      GSE128350 (1.67dpf trunk) embryo baseline late embryo, 1.67dpf, trunk, untreatment GSM3672149 GSE128350
      GSE128350 (1.67dpf whole embryo replicate2) embryo baseline late embryo, 1.67dpf, whole embryo, untreatment GSM3672157 GSE128350
      GSE128350 (1.17dpf whole embryo replicate3) embryo baseline late embryo, 1.17dpf, whole embryo, untreatment GSM3672158 GSE128350
      cvab004 (S2) heart baseline late embryo, 1.08dpf, untreatment S2 cvab004
      cvab004 (S3) heart baseline late embryo, 1.08dpf, untreatment S3 cvab004
      cvab004 (S4) heart baseline late embryo, 1.08dpf, untreatment S4 cvab004
      cvab004 (S5) heart baseline late embryo, 1.08dpf, untreatment S5 cvab004
  • adult
    • Dataset ID Tissue / organ Experiment type Sample description Source dataset ID Project ID
      GSE74652 (3 days-post-cryoinjury) heart regeneration adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury GSM1924887 GSE74652
      GSE74652 (7 days-post-cryoinjury) heart regeneration adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury GSM1924888 GSE74652

Gene

gene symbol or gene id:

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  • Users can input multiple gene symbol or gene id to obtain expression information in this dataset.
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