Fish Spatial Expression Database

GENE ID: ENSDARG00000069926

Symbol	Location	Gene type	Genome version	Species
hsd3b1	9: 21194445 ~ 21200464 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000069926 (hsd3b1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000001975	hsd11b2	7: 35112052 ~ 35126374 (-)
ENSDARG00000004051	CR354540.1	7: 58270474 ~ 58289847 (-)
ENSDARG00000046090	dhrs11a	5: 4054704 ~ 4142955 (+)
ENSDARG00000054842	hsd17b14	3: 29969143 ~ 29977495 (-)
ENSDARG00000027469	hsd17b1	3: 18038972 ~ 18047150 (-)
ENSDARG00000008858	cyp7b1	2: 42135719 ~ 42152135 (+)
ENSDARG00000069018	cyp7a1	2: 22150134 ~ 22152797 (-)
ENSDARG00000053241	sts	1: 32051581 ~ 32077473 (+)
ENSDARG00000043587	srd5a2a	1: 51066671 ~ 51073128 (+)
ENSDARG00000069926	hsd3b1	9: 21194445 ~ 21200464 (+)
ENSDARG00000006220	ugt1a1	9: 9969987 ~ 10003782 (-)
ENSDARG00000037550	cyp21a2	16: 16605517 ~ 16619897 (-)
ENSDARG00000028367	sult2st3	16: 44983613 ~ 45001842 (-)
ENSDARG00000042014	cyp11c1	16: 54459135 ~ 54471235 (-)
ENSDARG00000043307	srd5a3	20: 22194318 ~ 22198982 (-)
ENSDARG00000006137	star	8: 44703854 ~ 44707937 (+)
ENSDARG00000023287	hsd17b3	8: 29852353 ~ 29876413 (+)
ENSDARG00000033566	cyp17a1	13: 28601195 ~ 28610965 (-)
ENSDARG00000039067	srd5a2b	13: 35484229 ~ 35497586 (-)
ENSDARG00000026081	lhcgr	13: 47573405 ~ 47618847 (+)
ENSDARG00000041348	cyp19a1a	18: 39620535 ~ 39636348 (-)
ENSDARG00000020509	srd5a1	19: 27836913 ~ 27858033 (-)
ENSDARG00000001169	hsd17b8	19: 7173613 ~ 7179694 (+)
ENSDARG00000053966	cyp17a2	23: 45560534 ~ 45597854 (-)
ENSDARG00000023820	faxdc2	21: 45839917 ~ 45852112 (+)
ENSDARG00000063254	r3hdm4	11: 5666325 ~ 5674923 (+)
ENSDARG00000071377	hsd11b1la	22: 19552987 ~ 19562455 (+)
ENSDARG00000045553	hsd17b2	25: 35942867 ~ 35950535 (+)
ENSDARG00000092696	cyp11a2	25: 22296666 ~ 22311542 (+)
ENSDARG00000002347	cyp11a1	25: 22319940 ~ 22335283 (+)
ENSDARG00000069043	NA	--
ENSDARG00000053331	NA	--
ENSDARG00000009852	NA	--
ENSDARG00000045627	NA	--
ENSDARG00000091751	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample A)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838131	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000069926

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.