Fish Spatial Expression Database

GENE ID: ENSDARG00000045959

Symbol	Location	Gene type	Genome version	Species
csf3r	16: 3103182 ~ 3127749 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000045959 (csf3r), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000000767	spi1b	7: 32644673 ~ 32659353 (-)
ENSDARG00000069013	prdx4	5: 4298636 ~ 4318689 (+)
ENSDARG00000074850	il12rb2l	3: 19216567 ~ 19238394 (+)
ENSDARG00000090834	epor	3: 14543953 ~ 14561096 (+)
ENSDARG00000025428	socs3a	3: 57423137 ~ 57425961 (-)
ENSDARG00000039222	mpl	6: 33949280 ~ 33980881 (-)
ENSDARG00000053620	ebi3	2: 41936603 ~ 41942666 (-)
ENSDARG00000068681	crfb1	9: 19095023 ~ 19133001 (+)
ENSDARG00000076981	zgc:198329	16: 11558868 ~ 11569729 (+)
ENSDARG00000095772	si:dkey-11o1.2	16: 11573471 ~ 11578407 (+)
ENSDARG00000093279	si:dkey-11o1.3	16: 11603096 ~ 11621551 (+)
ENSDARG00000078177	cxcr3.1	16: 11623956 ~ 11642009 (+)
ENSDARG00000095134	si:dkey-250k15.9	16: 11652591 ~ 11653478 (+)
ENSDARG00000092520	si:dkey-250k15.10	16: 11660839 ~ 11680970 (+)
ENSDARG00000095048	si:dkey-250k15.7	16: 11683548 ~ 11709759 (+)
ENSDARG00000045959	csf3r	16: 3103182 ~ 3127749 (-)
ENSDARG00000055290	mpeg1.1	8: 29710110 ~ 29713621 (-)
ENSDARG00000037337	cnrip1b	13: 1089942 ~ 1097017 (+)
ENSDARG00000056407	irf8	18: 30567945 ~ 30573849 (+)
ENSDARG00000079372	si:ch211-264f5.6	19: 5731849 ~ 5769728 (-)
ENSDARG00000090297	ldlrad2	11: 36477481 ~ 36489816 (+)
ENSDARG00000019521	mpx	10: 7778870 ~ 7785945 (-)
ENSDARG00000040938	ssuh2.1	22: 30945349 ~ 30948457 (-)
ENSDARG00000054418	ssuh2.2	22: 30959733 ~ 30973791 (-)
ENSDARG00000076614	ssuh2.3	22: 30991365 ~ 30999489 (-)
ENSDARG00000054827	ssuh2.4	22: 31004735 ~ 31020690 (-)
ENSDARG00000068609	NA	--
ENSDARG00000007889	NA	--
ENSDARG00000070398	NA	--
ENSDARG00000088098	NA	--
ENSDARG00000091078	NA	--
ENSDARG00000043609	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE115140 (cancer)	tumor	ST	cancer	adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding	GSM3167486	GSE115140

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE104057 (heart replicate3)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788520	GSE104057
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000045959

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.