Fish Spatial Expression Database

GENE ID: ENSDARG00000037191

Symbol	Location	Gene type	Genome version	Species
ttr	20: 6142433 ~ 6157942 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000037191 (ttr), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000016749	slco1c1	4: 2674898 ~ 2727573 (-)
ENSDARG00000091800	zgc:174260	5: 28812453 ~ 28818613 (+)
ENSDARG00000090916	CR559930.1	5: 28824612 ~ 28826140 (+)
ENSDARG00000012076	apoa1a	5: 37978501 ~ 37981521 (+)
ENSDARG00000046092	si:ch211-283g2.3	5: 4232196 ~ 4245186 (-)
ENSDARG00000089310	gc	5: 45677781 ~ 45725008 (+)
ENSDARG00000038742	rbp1.2	2: 39021282 ~ 39028052 (+)
ENSDARG00000018077	rbp1.1	2: 39028337 ~ 39036604 (-)
ENSDARG00000055595	clul1	2: 31363286 ~ 31376607 (-)
ENSDARG00000069293	ahsg2	2: 10134345 ~ 10141741 (+)
ENSDARG00000020741	fga	1: 10063501 ~ 10071539 (-)
ENSDARG00000088891	slc23a3	9: 7371962 ~ 7394412 (-)
ENSDARG00000006220	ugt1a1	9: 9969987 ~ 10003782 (-)
ENSDARG00000020084	tg	16: 31530762 ~ 31598771 (-)
ENSDARG00000020984	slc16a10	20: 122123 ~ 147578 (-)
ENSDARG00000037191	ttr	20: 6142433 ~ 6157942 (+)
ENSDARG00000010434	clu	20: 39260475 ~ 39273987 (-)
ENSDARG00000005392	slc5a5	8: 13364950 ~ 13382351 (+)
ENSDARG00000094857	dio2	17: 16873417 ~ 16876752 (+)
ENSDARG00000012788	foxa3	18: 46350574 ~ 46354269 (-)
ENSDARG00000052497	zgc:110789	18: 12034985 ~ 12052132 (-)
ENSDARG00000062817	crym	12: 10448226 ~ 10462503 (+)
ENSDARG00000021163	thrb	19: 17514631 ~ 17658253 (-)
ENSDARG00000095963	asgrl2	23: 44881020 ~ 44894125 (+)
ENSDARG00000044684	rbp4l	21: 20338613 ~ 20342096 (-)
ENSDARG00000007024	uox	11: 8160894 ~ 8168011 (-)
ENSDARG00000055036	itih3a	11: 3614326 ~ 3629216 (-)
ENSDARG00000055053	itih1	11: 3630627 ~ 3647014 (-)
ENSDARG00000040747	tm4sf4	22: 38127467 ~ 38137908 (-)
ENSDARG00000051874	stra6	25: 22571475 ~ 22634675 (+)
ENSDARG00000045792	si:dkey-106n21.1	25: 18159795 ~ 18249751 (-)
ENSDARG00000033280	NA	--
ENSDARG00000060649	NA	--
ENSDARG00000077505	NA	--
ENSDARG00000074122	NA	--
ENSDARG00000086281	NA	--
ENSDARG00000089969	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709
	GSE159709 (Visium-sample C)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838133	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
	GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000037191

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.