Fish Spatial Expression Database

GENE ID: ENSDARG00000015752

Symbol	Location	Gene type	Genome version	Species
zap70	8: 20393250 ~ 20414364 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000015752 (zap70), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000094764	fyba	5: 8616667 ~ 8636168 (-)
ENSDARG00000075720	il2rb	3: 25191366 ~ 25209006 (+)
ENSDARG00000006468	grap2a	3: 29445473 ~ 29468859 (+)
ENSDARG00000071084	wipf1b	6: 10781146 ~ 10809546 (-)
ENSDARG00000095102	si:ch211-132g1.4	1: 1904419 ~ 1911381 (+)
ENSDARG00000040250	si:ch211-132g1.1	1: 1915967 ~ 1923253 (+)
ENSDARG00000093102	si:ch211-132g1.6	1: 1896737 ~ 1899848 (+)
ENSDARG00000061717	cytip	9: 5253137 ~ 5263947 (-)
ENSDARG00000037473	cd79a	16: 26132951 ~ 26140768 (-)
ENSDARG00000089043	ptpn6	16: 31720042 ~ 31756963 (-)
ENSDARG00000075437	shc1	16: 22781854 ~ 22863603 (-)
ENSDARG00000094894	tyrobp	16: 25196572 ~ 25200757 (+)
ENSDARG00000090945	si:ch211-170d8.8	8: 39742459 ~ 39760427 (-)
ENSDARG00000015752	zap70	8: 20393250 ~ 20414364 (+)
ENSDARG00000016016	dbnlb	8: 52314542 ~ 52350684 (+)
ENSDARG00000091233	FP236356.1	17: 48486308 ~ 48504329 (-)
ENSDARG00000079826	gpr174	14: 10567104 ~ 10601294 (+)
ENSDARG00000017565	itk	14: 34045284 ~ 34074510 (-)
ENSDARG00000042722	blnk	13: 50518815 ~ 50567658 (-)
ENSDARG00000078185	pacs2	13: 36446187 ~ 36525982 (-)
ENSDARG00000092862	si:ch211-260p9.3	18: 13300768 ~ 13321062 (+)
ENSDARG00000055875	pag1	19: 32048379 ~ 32150214 (-)
ENSDARG00000009958	cbl	15: 23208042 ~ 23265405 (+)
ENSDARG00000038442	plcg1	23: 2789422 ~ 2872819 (+)
ENSDARG00000020788	sla2	23: 14808221 ~ 14830627 (-)
ENSDARG00000058682	cd8b	21: 11535304 ~ 11544499 (+)
ENSDARG00000055955	lcp2a	21: 30306369 ~ 30347592 (+)
ENSDARG00000021982	sh3bp2	10: 15224660 ~ 15241223 (+)
ENSDARG00000015199	cblb	10: 28587446 ~ 28733002 (+)
ENSDARG00000086623	vav3a	24: 29563767 ~ 29586082 (-)
ENSDARG00000013916	NA	--
ENSDARG00000038458	NA	--
ENSDARG00000059282	NA	--
ENSDARG00000075062	NA	--
ENSDARG00000088902	NA	--
ENSDARG00000076399	NA	--
ENSDARG00000087041	NA	--
ENSDARG00000088536	NA	--

Expression

Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
GSE159709 (Visium-sample A)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838131	GSE159709
GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709
GSE159709 (Visium-sample C)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838133	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE115140 (cancer)	tumor	ST	cancer	adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding	GSM3167486	GSE115140

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
	GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000015752

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.