Fish Spatial Expression Database

GENE ID: ENSDARG00000038018

Symbol	Location	Gene type	Genome version	Species
prph2a	12: 34896956 ~ 34901874 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000038018 (prph2a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000045677	opn1sw1	4: 13577665 ~ 13580348 (-)
ENSDARG00000045580	lum	4: 16349042 ~ 16354292 (-)
ENSDARG00000088044	si:ch73-139j3.4	4: 9524805 ~ 9533345 (-)
ENSDARG00000010454	guca1a	4: 22343093 ~ 22350976 (+)
ENSDARG00000097008	opn1mw1	6: 41181869 ~ 41183823 (+)
ENSDARG00000011886	pdca	2: 20882954 ~ 20890429 (-)
ENSDARG00000062661	abca4b	2: 15203322 ~ 15294707 (+)
ENSDARG00000031600	rd3	20: 13969414 ~ 13997835 (+)
ENSDARG00000091135	si:ch211-253p18.5	20: 20713385 ~ 20722619 (+)
ENSDARG00000021753	ccdc25	20: 39338700 ~ 39344130 (-)
ENSDARG00000002193	rho	8: 54076195 ~ 54077740 (-)
ENSDARG00000075898	spata7	17: 2684992 ~ 2721464 (-)
ENSDARG00000098051	opn6b	17: 28760586 ~ 28770800 (-)
ENSDARG00000031434	rcor1	17: 29251662 ~ 29271359 (-)
ENSDARG00000000380	pde6a	14: 25005403 ~ 25035010 (-)
ENSDARG00000026926	rom1b	14: 45675306 ~ 45701004 (+)
ENSDARG00000014840	prph2b	13: 3252950 ~ 3258772 (+)
ENSDARG00000004643	cdhr1a	13: 29480010 ~ 29505946 (-)
ENSDARG00000055938	tspan14	13: 21638454 ~ 21650404 (-)
ENSDARG00000039455	tspan15	13: 22924024 ~ 22961610 (-)
ENSDARG00000063361	si:ch211-1e14.1	18: 12364733 ~ 12451772 (-)
ENSDARG00000055291	rab18a	12: 22921477 ~ 22933524 (+)
ENSDARG00000038018	prph2a	12: 34896956 ~ 34901874 (+)
ENSDARG00000011076	zgc:91968	19: 4990320 ~ 4999232 (+)
ENSDARG00000055255	pitpnm3	15: 26678834 ~ 26844591 (-)
ENSDARG00000013393	guca1b	23: 19227296 ~ 19230627 (-)
ENSDARG00000012125	cnga1b	23: 43849190 ~ 43866354 (+)
ENSDARG00000089101	plrdgb	21: 39705483 ~ 39897711 (+)
ENSDARG00000070666	rhol	11: 19095431 ~ 19097746 (-)
ENSDARG00000057169	abca4a	24: 28561038 ~ 28645334 (+)
ENSDARG00000002585	NA	--
ENSDARG00000014095	NA	--
ENSDARG00000043294	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample A)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838131	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000038018

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.