Fish Spatial Expression Database

GENE ID: ENSDARG00000077045

Symbol	Location	Gene type	Genome version	Species
scg5	19: 47523730 ~ 47527192 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000077045 (scg5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000059950	plxdc2	7: 41517173 ~ 41627956 (-)
ENSDARG00000035970	ptprn2	7: 40228422 ~ 40499386 (+)
ENSDARG00000067537	pcsk5a	5: 55265274 ~ 55349429 (+)
ENSDARG00000077047	ptprnb	6: 13920479 ~ 13987739 (+)
ENSDARG00000060115	lrrn1	6: 43076516 ~ 43092175 (-)
ENSDARG00000038574	scg2b	2: 47581997 ~ 47585197 (+)
ENSDARG00000077219	si:ch211-106h4.6	2: 31614533 ~ 31626209 (+)
ENSDARG00000055874	cpe	1: 20839482 ~ 20911297 (-)
ENSDARG00000058646	ptprna	9: 7548533 ~ 7619622 (+)
ENSDARG00000008829	chga	20: 27020201 ~ 27045991 (+)
ENSDARG00000076500	chgb	20: 45741566 ~ 45752016 (+)
ENSDARG00000061314	ngrn	8: 25034529 ~ 25040762 (+)
ENSDARG00000060518	pcsk5b	8: 38649989 ~ 38810233 (-)
ENSDARG00000092970	tmsb2	14: 34486629 ~ 34488993 (+)
ENSDARG00000019451	pcsk2	13: 912123 ~ 977652 (+)
ENSDARG00000086288	scg3	18: 39434589 ~ 39473055 (-)
ENSDARG00000043635	cmc2	18: 29885190 ~ 29898369 (-)
ENSDARG00000014634	mbtps1	18: 21645309 ~ 21685055 (-)
ENSDARG00000057296	cbln1	18: 18104235 ~ 18110032 (+)
ENSDARG00000022564	NA	18: 27309404 ~ 27316599 (-)
ENSDARG00000005185	cpn1	12: 31616412 ~ 31631297 (+)
ENSDARG00000096728	cpn1	12: 31608908 ~ 31631132 (+)
ENSDARG00000077045	scg5	19: 47523730 ~ 47527192 (-)
ENSDARG00000069968	pcsk7	15: 518092 ~ 542133 (+)
ENSDARG00000036695	calcoco1a	23: 35981839 ~ 36003441 (-)
ENSDARG00000054911	tmsb	21: 26389391 ~ 26393520 (+)
ENSDARG00000002600	pcsk1	21: 11684830 ~ 11722343 (+)
ENSDARG00000042753	cts12	22: 16406920 ~ 16419126 (-)
ENSDARG00000088373	NA	--
ENSDARG00000090857	NA	--
ENSDARG00000091371	NA	--
ENSDARG00000087448	NA	--

Expression

Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
GSE159709 (Visium-sample A)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838131	GSE159709
GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709
GSE159709 (Visium-sample C)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838133	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000077045

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.