Fish Spatial Expression Database

GENE ID: ENSDARG00000014490

Symbol	Location	Gene type	Genome version	Species
tac1	19: 25649626 ~ 25653185 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000014490 (tac1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000094132	igf1	4: 17310143 ~ 17326717 (+)
ENSDARG00000043313	ank2b	7: 57886148 ~ 58130703 (-)
ENSDARG00000036045	penkb	7: 58686860 ~ 58696086 (+)
ENSDARG00000004015	adcyap1a	7: 71547747 ~ 71556734 (+)
ENSDARG00000077167	nmbb	7: 30085149 ~ 30087048 (-)
ENSDARG00000056590	calca	7: 27680556 ~ 27696958 (-)
ENSDARG00000059883	trpv1	5: 42136359 ~ 42158556 (+)
ENSDARG00000035533	tacr1a	5: 28160503 ~ 28213627 (+)
ENSDARG00000044326	BX950188.1	6: 36465347 ~ 36542102 (+)
ENSDARG00000004869	penka	2: 11508691 ~ 11512819 (-)
ENSDARG00000063518	zgc:153913	2: 63298 ~ 66646 (-)
ENSDARG00000003054	tacr3l	1: 52518176 ~ 52538517 (+)
ENSDARG00000029718	p2rx3b	1: 44746154 ~ 44758388 (+)
ENSDARG00000075112	tacr3a	1: 43801957 ~ 43892349 (-)
ENSDARG00000009026	ank2a	1: 14073891 ~ 14158563 (+)
ENSDARG00000001835	nalcn	9: 31589425 ~ 31747106 (-)
ENSDARG00000070810	ccka	16: 5774977 ~ 5779201 (+)
ENSDARG00000077499	plekho1b	16: 38015350 ~ 38067952 (-)
ENSDARG00000097057	fxyd6l	16: 24601140 ~ 24642815 (-)
ENSDARG00000058732	scgn	16: 6356460 ~ 6377672 (-)
ENSDARG00000088377	rp1l1b	20: 19119800 ~ 19148677 (+)
ENSDARG00000006868	trh	8: 54220551 ~ 54223316 (-)
ENSDARG00000078247	vip	13: 46987955 ~ 46991577 (-)
ENSDARG00000074509	tacr2	13: 22964868 ~ 22971495 (+)
ENSDARG00000057887	nts	18: 16330025 ~ 16339902 (+)
ENSDARG00000062688	gpnmb	19: 20247435 ~ 20270207 (-)
ENSDARG00000014490	tac1	19: 25649626 ~ 25653185 (+)
ENSDARG00000040799	sst1.1	15: 36156986 ~ 36158851 (+)
ENSDARG00000087798	pdyn	23: 41799748 ~ 41802335 (+)
ENSDARG00000093089	tac3a	23: 28139489 ~ 28141419 (-)
ENSDARG00000043918	FO904943.1	23: 43995820 ~ 44007014 (+)
ENSDARG00000043074	grp	21: 10765886 ~ 10773344 (-)
ENSDARG00000079443	vipb	11: 43401201 ~ 43414172 (+)
ENSDARG00000031875	trpa1b	24: 13635108 ~ 13715761 (+)
ENSDARG00000022372	kng1	22: 36839080 ~ 36876133 (-)
ENSDARG00000091377	galn	25: 10556274 ~ 10565006 (-)
ENSDARG00000038634	NA	--
ENSDARG00000081322	NA	--
ENSDARG00000016025	NA	--
ENSDARG00000054497	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000014490

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.