Fish Spatial Expression Database

GENE ID: ENSDARG00000043085

Symbol	Location	Gene type	Genome version	Species
alox5b.1	15: 942531 ~ 952891 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000043085 (alox5b.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000006029	lta4h	4: 7653607 ~ 7673165 (-)
ENSDARG00000069463	alox12	7: 26029672 ~ 26047946 (+)
ENSDARG00000052148	ptgs1	5: 64900223 ~ 64946436 (+)
ENSDARG00000033355	zgc:101699	5: 1877464 ~ 1901838 (+)
ENSDARG00000004539	ptgs2a	2: 20916497 ~ 20923864 (-)
ENSDARG00000024546	pla2g4aa	2: 20925899 ~ 20957362 (+)
ENSDARG00000026548	cyp2u1	1: 49923402 ~ 49932040 (-)
ENSDARG00000010276	ptgs2b	20: 34121818 ~ 34127415 (-)
ENSDARG00000017141	pla2g4ab	20: 34129465 ~ 34148190 (+)
ENSDARG00000094057	cyp2j20	20: 25597527 ~ 25615802 (+)
ENSDARG00000042980	cyp2p7	20: 25568694 ~ 25615727 (+)
ENSDARG00000042982	cyp2p8	20: 25575391 ~ 25580002 (+)
ENSDARG00000009153	pla2g1b	8: 39724138 ~ 39733667 (+)
ENSDARG00000079745	si:ch211-166a6.5	8: 4445232 ~ 4508248 (-)
ENSDARG00000056535	pla2g4f.1	17: 21452258 ~ 21467430 (+)
ENSDARG00000070953	pla2g4f.2	17: 21477892 ~ 21494295 (+)
ENSDARG00000058246	cysltr1	14: 10450216 ~ 10462758 (+)
ENSDARG00000062598	ltc4s	14: 16370063 ~ 16379843 (-)
ENSDARG00000057273	alox5a	13: 18128275 ~ 18174864 (-)
ENSDARG00000026829	cotl1	18: 13203831 ~ 13216672 (+)
ENSDARG00000003077	gpx9	12: 45676667 ~ 45688953 (+)
ENSDARG00000043085	alox5b.1	15: 942531 ~ 952891 (-)
ENSDARG00000043089	alox5b.2	15: 963292 ~ 976353 (+)
ENSDARG00000091511	gpx7	23: 42219613 ~ 42232124 (-)
ENSDARG00000018146	gpx1a	11: 36048579 ~ 36156971 (-)
ENSDARG00000003259	loxa	10: 7738540 ~ 7756876 (-)
ENSDARG00000054755	alox5ap	10: 36458563 ~ 36463715 (+)
ENSDARG00000008948	pla2g3	10: 3520256 ~ 3532997 (+)
ENSDARG00000074579	NA	--
ENSDARG00000091765	NA	--
ENSDARG00000069800	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000043085

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.