Fish Spatial Expression Database

GENE ID: ENSDARG00000056909

Symbol	Location	Gene type	Genome version	Species
LO018309.1	24: 33552198 ~ 33578392 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000056909 (LO018309.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000013360	sh3gl3a	7: 12840556 ~ 12909352 (-)
ENSDARG00000008377	epn2	3: 39656188 ~ 39690218 (+)
ENSDARG00000019392	stat5a	3: 17251542 ~ 17331919 (+)
ENSDARG00000078953	epn3a	3: 50155245 ~ 50269145 (+)
ENSDARG00000074903	itcha	6: 57491794 ~ 57539141 (-)
ENSDARG00000053939	tgfa	6: 40992409 ~ 41009381 (+)
ENSDARG00000067958	sh3gl1a	2: 49457449 ~ 49511458 (+)
ENSDARG00000023600	sh3gl2a	1: 26740718 ~ 26782573 (-)
ENSDARG00000010411	epn1	16: 12730311 ~ 12756528 (+)
ENSDARG00000078217	cblc	16: 25761101 ~ 25800819 (+)
ENSDARG00000002642	sh3gl1b	8: 18842278 ~ 18880399 (-)
ENSDARG00000052739	egf	14: 36279826 ~ 36325558 (-)
ENSDARG00000075121	hbegfa	14: 7048930 ~ 7051940 (+)
ENSDARG00000068763	plcg2	18: 13235714 ~ 13293642 (+)
ENSDARG00000055588	stat5b	12: 13560082 ~ 13650472 (-)
ENSDARG00000079847	zgc:194578	19: 10375782 ~ 10395683 (-)
ENSDARG00000009958	cbl	15: 23208042 ~ 23265405 (+)
ENSDARG00000038442	plcg1	23: 2789422 ~ 2872819 (+)
ENSDARG00000036831	rnf41	23: 32308814 ~ 32334208 (-)
ENSDARG00000039901	sh3gl2b	23: 45043301 ~ 45049044 (-)
ENSDARG00000060006	nedd4l	21: 10890258 ~ 11054876 (-)
ENSDARG00000077818	nrg2a	21: 28554716 ~ 28737321 (-)
ENSDARG00000031246	hbegfb	21: 30161295 ~ 30168949 (-)
ENSDARG00000015199	cblb	10: 28587446 ~ 28733002 (+)
ENSDARG00000097537	wwp1	24: 42127983 ~ 42141008 (+)
ENSDARG00000056909	LO018309.1	24: 33552198 ~ 33578392 (-)
ENSDARG00000062080	shc2	22: 21317597 ~ 21351469 (+)
ENSDARG00000007302	sh3gl3b	25: 19522954 ~ 19537323 (+)
ENSDARG00000014709	NA	--
ENSDARG00000057731	NA	--
ENSDARG00000063625	NA	--
ENSDARG00000090650	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample C)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838133	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
	GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000056909

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.