Fish Spatial Expression Database

GENE ID: ENSDARG00000040854

Symbol	Location	Gene type	Genome version	Species
tsg101a	25: 25132703 ~ 25142387 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000040854 (tsg101a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000011897	tsg101b	7: 49619375 ~ 49637278 (-)
ENSDARG00000036080	cd81a	7: 32983440 ~ 33023404 (-)
ENSDARG00000091619	mvb12ba	5: 5171254 ~ 5243111 (-)
ENSDARG00000060683	lrsam1	5: 32865364 ~ 32882162 (-)
ENSDARG00000068148	arrdc1a	5: 29516844 ~ 29531948 (-)
ENSDARG00000097055	si:ch211-284f22.3	5: 59116068 ~ 59202264 (+)
ENSDARG00000039319	vps37b	5: 27999886 ~ 28016805 (-)
ENSDARG00000020960	hgs	3: 50076793 ~ 50118140 (-)
ENSDARG00000016255	chmp4ba	6: 49901465 ~ 49920320 (+)
ENSDARG00000069175	vps4b	2: 13255986 ~ 13333991 (-)
ENSDARG00000002127	stam	2: 31437547 ~ 31452606 (+)
ENSDARG00000031836	vps37c	1: 44949909 ~ 44963259 (+)
ENSDARG00000017119	vps37a	1: 16463079 ~ 16480213 (+)
ENSDARG00000005318	stam2	9: 38043337 ~ 38065147 (+)
ENSDARG00000037998	flot1b	16: 10287588 ~ 10316359 (-)
ENSDARG00000079478	mvb12bb	8: 33420677 ~ 33568964 (-)
ENSDARG00000007323	chmp4bb	8: 45361735 ~ 45375108 (+)
ENSDARG00000038064	chmp3	17: 43468732 ~ 43476280 (+)
ENSDARG00000005842	cd9a	18: 7122577 ~ 7143920 (-)
ENSDARG00000026070	cd82b	18: 27571448 ~ 27626391 (+)
ENSDARG00000059079	vps25	12: 3714076 ~ 3721957 (-)
ENSDARG00000058076	snf8	12: 20652957 ~ 20658285 (-)
ENSDARG00000077037	txlna	19: 29834440 ~ 29853435 (-)
ENSDARG00000025269	pdcd6ip	19: 42847306 ~ 42875185 (+)
ENSDARG00000025147	cd63	23: 32066168 ~ 32085939 (+)
ENSDARG00000058746	ubap1	21: 11865972 ~ 11884517 (+)
ENSDARG00000079839	arrdc1b	21: 14699693 ~ 14762944 (-)
ENSDARG00000057021	vps36	10: 24643079 ~ 24680425 (+)
ENSDARG00000005220	pdcd6	24: 12629649 ~ 12689571 (-)
ENSDARG00000040854	tsg101a	25: 25132703 ~ 25142387 (-)
ENSDARG00000028391	NA	--
ENSDARG00000029241	NA	--
ENSDARG00000041900	NA	--
ENSDARG00000042558	NA	--
ENSDARG00000045949	NA	--
ENSDARG00000052666	NA	--
ENSDARG00000021202	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample A)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838131	GSE159709
	GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE115140 (cancer)	tumor	ST	cancer	adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding	GSM3167486	GSE115140

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
	GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000040854

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.