Fish Spatial Expression Database

GENE ID: ENSDARG00000030621

Symbol	Location	Gene type	Genome version	Species
th	25: 24055341 ~ 24074500 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000030621 (th), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000045598	akr1b1.2	4: 14906608 ~ 14915268 (-)
ENSDARG00000005840	got2b	7: 51774502 ~ 51793881 (+)
ENSDARG00000016141	slc6a2	7: 35348471 ~ 35380186 (-)
ENSDARG00000036344	calb2b	7: 24681278 ~ 24699985 (-)
ENSDARG00000058379	otpb	5: 51615025 ~ 51619742 (-)
ENSDARG00000004406	spra	5: 72129708 ~ 72136548 (-)
ENSDARG00000004251	dhfr	5: 26138313 ~ 26146488 (+)
ENSDARG00000044532	nr4a2b	6: 12462079 ~ 12466550 (+)
ENSDARG00000037378	qdprb1	1: 22845225 ~ 22851481 (-)
ENSDARG00000090822	zgc:171517	1: 24376394 ~ 24380533 (+)
ENSDARG00000017007	nr4a2a	9: 5040985 ~ 5046315 (-)
ENSDARG00000038918	drd1b	9: 54417141 ~ 54419308 (+)
ENSDARG00000031598	calb1	16: 36765934 ~ 36798783 (-)
ENSDARG00000016494	ddc	16: 8298542 ~ 8342749 (-)
ENSDARG00000004219	slc6a3	16: 248239 ~ 263658 (-)
ENSDARG00000020354	lmx1a	20: 33922339 ~ 33940260 (+)
ENSDARG00000068365	lmx1bb	8: 33258580 ~ 33381913 (-)
ENSDARG00000058553	sprb	8: 1065458 ~ 1070636 (+)
ENSDARG00000053644	got1l1	8: 37755099 ~ 37772150 (+)
ENSDARG00000078157	NA	8: 45708567 ~ 45729758 (-)
ENSDARG00000015110	slc18a2	17: 23782324 ~ 23811332 (+)
ENSDARG00000040190	qdpra	14: 46873229 ~ 46897067 (-)
ENSDARG00000091029	phox2bb	14: 17064126 ~ 17072736 (-)
ENSDARG00000070069	pitx3	13: 7555720 ~ 7575216 (-)
ENSDARG00000031981	pcbd1	13: 25720969 ~ 25726534 (+)
ENSDARG00000015854	chata	13: 29406814 ~ 29421331 (-)
ENSDARG00000075454	hdc	18: 73434 ~ 81280 (-)
ENSDARG00000041068	got2a	18: 21178721 ~ 21188768 (-)
ENSDARG00000041062	calb2a	18: 21198762 ~ 21218851 (-)
ENSDARG00000069630	tat	18: 13162728 ~ 13179510 (+)
ENSDARG00000036222	npy	19: 20110699 ~ 20114149 (-)
ENSDARG00000039077	tyr	15: 43799258 ~ 43818697 (+)
ENSDARG00000014201	otpa	21: 7582036 ~ 7586992 (+)
ENSDARG00000069446	dbh	10: 10564261 ~ 10607118 (-)
ENSDARG00000030621	th	25: 24055341 ~ 24074500 (-)
ENSDARG00000033280	NA	--
ENSDARG00000071751	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000030621

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.