Fish Spatial Expression Database

GENE ID: ENSDARG00000004909

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000004909 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000044125	txn	7: 24357231 ~ 24364826 (-)
ENSDARG00000053405	sord	7: 30923283 ~ 30926030 (-)
ENSDARG00000070168	sod3a	7: 71335815 ~ 71339294 (+)
ENSDARG00000028087	aldh2.2	5: 69597166 ~ 69621227 (-)
ENSDARG00000089924	aldh2.1	5: 69574677 ~ 69595487 (-)
ENSDARG00000026655	tspo	6: 40578219 ~ 40583253 (-)
ENSDARG00000006207	gpx1b	6: 42338309 ~ 42341219 (+)
ENSDARG00000058734	prdx1	2: 6104378 ~ 6115688 (-)
ENSDARG00000012194	scp2a	2: 6005199 ~ 6039757 (-)
ENSDARG00000076836	gpx4b	2: 56642138 ~ 56655769 (-)
ENSDARG00000031435	NA	1: 40263671 ~ 40270561 (+)
ENSDARG00000025350	prdx2	1: 51721851 ~ 51729862 (+)
ENSDARG00000079183	sod3b	1: 39990547 ~ 39992042 (+)
ENSDARG00000027992	hao2	9: 21146862 ~ 21164617 (+)
ENSDARG00000070654	pex5	16: 12064576 ~ 12097558 (-)
ENSDARG00000042644	sod2	20: 30937934 ~ 30947547 (+)
ENSDARG00000043511	prdx6	20: 15164482 ~ 15184869 (+)
ENSDARG00000013302	gpx8	8: 40177361 ~ 40183197 (-)
ENSDARG00000024160	hao1	17: 4030493 ~ 4063581 (+)
ENSDARG00000019236	gsr	14: 38852969 ~ 38873145 (-)
ENSDARG00000043342	gpx3	14: 49439887 ~ 49460409 (-)
ENSDARG00000032102	prdx3	13: 9842276 ~ 9851472 (+)
ENSDARG00000076487	haao	13: 8954667 ~ 8982782 (+)
ENSDARG00000003077	gpx9	12: 45676667 ~ 45688953 (+)
ENSDARG00000028259	aldh3a2a	15: 20830146 ~ 20839910 (-)
ENSDARG00000091511	gpx7	23: 42219613 ~ 42232124 (-)
ENSDARG00000029381	aldh3a2b	21: 39029713 ~ 39058490 (-)
ENSDARG00000055064	prdx5	21: 26657404 ~ 26664825 (+)
ENSDARG00000018146	gpx1a	11: 36048579 ~ 36156971 (-)
ENSDARG00000002523	hsdl2	10: 11260170 ~ 11283239 (+)
ENSDARG00000043848	sod1	10: 25694395 ~ 25699454 (-)
ENSDARG00000068478	gpx4a	22: 17589608 ~ 17611742 (-)
ENSDARG00000004909	NA	--
ENSDARG00000017864	NA	--
ENSDARG00000028345	NA	--
ENSDARG00000031873	NA	--
ENSDARG00000032200	NA	--
ENSDARG00000037094	NA	--
ENSDARG00000090766	NA	--
ENSDARG00000094543	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE104057 (heart replicate1)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788518	GSE104057
GSE104057 (heart replicate2)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788519	GSE104057
GSE104057 (heart replicate3)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788520	GSE104057
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350
cvab004 (S2)	heart	baseline	late embryo, 1.08dpf, untreatment	S2	cvab004
cvab004 (S4)	heart	baseline	late embryo, 1.08dpf, untreatment	S4	cvab004

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000004909

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.