Fish Spatial Expression Database

GENE ID: ENSDARG00000017298

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000017298 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000077239	si:ch211-165i18.2	4: 73606482 ~ 73612754 (+)
ENSDARG00000014439	dgkza	7: 38962207 ~ 39157394 (+)
ENSDARG00000078890	wdfy3	5: 40052930 ~ 40190949 (-)
ENSDARG00000094764	fyba	5: 8616667 ~ 8636168 (-)
ENSDARG00000093074	si:ch211-139g16.8	3: 18389363 ~ 18396564 (+)
ENSDARG00000013390	CABZ01088367.1	6: 59029485 ~ 59048088 (+)
ENSDARG00000007663	amph	2: 31891335 ~ 31937005 (-)
ENSDARG00000036106	rgs18	2: 6535865 ~ 6548838 (-)
ENSDARG00000000086	itsn1	1: 46999441 ~ 47089818 (-)
ENSDARG00000004634	osbp	1: 52662203 ~ 52699063 (+)
ENSDARG00000016939	itgb2	9: 44961138 ~ 44983666 (-)
ENSDARG00000060601	rgs7bpa	8: 31901318 ~ 31919624 (-)
ENSDARG00000042717	adipor1b	8: 28358161 ~ 28365547 (+)
ENSDARG00000028740	msnb	14: 9287683 ~ 9336601 (+)
ENSDARG00000004433	btk	14: 38891722 ~ 38929885 (-)
ENSDARG00000022895	mcf2a	14: 32440639 ~ 32503363 (-)
ENSDARG00000030938	fermt3b	14: 45970033 ~ 45997630 (+)
ENSDARG00000077009	wdfy4	13: 30985047 ~ 31025505 (-)
ENSDARG00000040319	CABZ01041494.1	18: 46798159 ~ 46799199 (+)
ENSDARG00000074201	flna	23: 19759128 ~ 19809027 (+)
ENSDARG00000044694	fybb	21: 19844195 ~ 19866351 (+)
ENSDARG00000068958	frmd7	21: 43400351 ~ 43416128 (+)
ENSDARG00000089914	clint1b	21: 33503835 ~ 33550282 (+)
ENSDARG00000020544	rem1	11: 24313931 ~ 24332052 (+)
ENSDARG00000002912	adipor1a	11: 24800156 ~ 24815193 (+)
ENSDARG00000056601	plekha3	11: 29756860 ~ 29768054 (-)
ENSDARG00000054755	alox5ap	10: 36458563 ~ 36463715 (+)
ENSDARG00000071460	si:ch211-234p6.5	24: 38155830 ~ 38191962 (+)
ENSDARG00000076025	dgkzb	25: 7784582 ~ 7866470 (+)
ENSDARG00000017298	NA	--
ENSDARG00000089948	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
	GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
	GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE104057 (heart replicate1)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788518	GSE104057
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000017298

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.