Fish Spatial Expression Database

GENE ID: ENSDARG00000052326

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000052326 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000056938	kera	4: 16337156 ~ 16345227 (-)
ENSDARG00000045580	lum	4: 16349042 ~ 16354292 (-)
ENSDARG00000074362	NA	3: 52092599 ~ 52110809 (+)
ENSDARG00000052025	pomgnt1	6: 33076839 ~ 33095766 (+)
ENSDARG00000040608	gcnt7	6: 56097971 ~ 56111829 (-)
ENSDARG00000015374	st3gal3a	6: 3334392 ~ 3405495 (+)
ENSDARG00000088515	st6gal2b	6: 15437132 ~ 15492073 (-)
ENSDARG00000079700	b3galt1a	6: 10140554 ~ 10168822 (-)
ENSDARG00000015252	st3gal3b	2: 17266759 ~ 17393971 (-)
ENSDARG00000004396	b3gnt5b	2: 7749394 ~ 7757273 (-)
ENSDARG00000052376	b3gnt2a	1: 53475074 ~ 53476758 (-)
ENSDARG00000036415	glb1	1: 52462068 ~ 52478746 (+)
ENSDARG00000039335	st6gal2a	9: 6009077 ~ 6127872 (+)
ENSDARG00000060671	lct	9: 46369932 ~ 46399611 (-)
ENSDARG00000092404	NA	9: 46387419 ~ 46399611 (-)
ENSDARG00000029955	glb1l	9: 12847040 ~ 12869049 (+)
ENSDARG00000088117	fut8b	20: 50650143 ~ 50740404 (+)
ENSDARG00000002401	gale	17: 24877392 ~ 24890932 (-)
ENSDARG00000016460	fut9a	17: 15631619 ~ 15657029 (-)
ENSDARG00000091902	b3gnt2b	17: 24036791 ~ 24082364 (+)
ENSDARG00000015449	fut8a	17: 33719415 ~ 33906488 (+)
ENSDARG00000018788	st8sia2	18: 25027495 ~ 25051846 (-)
ENSDARG00000041006	st3gal4	18: 48696094 ~ 48745517 (-)
ENSDARG00000045301	st8sia3	21: 1780790 ~ 1799265 (-)
ENSDARG00000044514	st6gal1	21: 31150438 ~ 31184035 (+)
ENSDARG00000094253	NA	21: 4957685 ~ 4958755 (+)
ENSDARG00000044895	fmoda	11: 21025895 ~ 21031773 (-)
ENSDARG00000070597	prelp	11: 21076872 ~ 21086254 (+)
ENSDARG00000018971	b3gnt5a	11: 10541258 ~ 10550377 (+)
ENSDARG00000069543	galt	10: 14263684 ~ 14488518 (-)
ENSDARG00000093600	omd	22: 10463890 ~ 10470663 (-)
ENSDARG00000071506	mgat5	22: 11972786 ~ 12091448 (+)
ENSDARG00000060471	gcnt3	25: 34274691 ~ 34284144 (-)
ENSDARG00000059055	NA	--
ENSDARG00000075154	NA	--
ENSDARG00000052326	NA	--
ENSDARG00000059862	NA	--
ENSDARG00000079722	NA	--
ENSDARG00000087086	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE104057 (heart replicate1)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788518	GSE104057
GSE104057 (heart replicate2)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788519	GSE104057
GSE104057 (heart replicate3)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788520	GSE104057
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350
cvab004 (S2)	heart	baseline	late embryo, 1.08dpf, untreatment	S2	cvab004
cvab004 (S4)	heart	baseline	late embryo, 1.08dpf, untreatment	S4	cvab004

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000052326

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.