Fish Spatial Expression Database

GENE ID: ENSDARG00000094706

Symbol	Location	Gene type	Genome version	Species
cxcl11.6	5: 42076672 ~ 42077575 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000094706 (cxcl11.6), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000058389	ccl19a.1	5: 13353866 ~ 13392962 (+)
ENSDARG00000094706	cxcl11.6	5: 42076672 ~ 42077575 (-)
ENSDARG00000044561	ccr7	6: 10923105 ~ 10927766 (-)
ENSDARG00000058179	ackr3b	6: 15751982 ~ 15757867 (-)
ENSDARG00000055186	ccr9a	2: 32796873 ~ 32799083 (+)
ENSDARG00000090783	mfap4	1: 59090583 ~ 59092056 (+)
ENSDARG00000054975	cxcr2	9: 48108174 ~ 48109197 (+)
ENSDARG00000070755	ccr11.1	16: 7697878 ~ 7699207 (+)
ENSDARG00000041041	cxcr3.2	16: 11818126 ~ 11825303 (+)
ENSDARG00000070669	cxcr3.3	16: 11834516 ~ 11840134 (+)
ENSDARG00000007358	cxcr3.1	16: 11853212 ~ 11859309 (-)
ENSDARG00000086616	cabz01093075.1	16: 8716800 ~ 8725803 (+)
ENSDARG00000087474	ccr6a	20: 30610547 ~ 30614519 (+)
ENSDARG00000041919	ccl38.1	20: 39332579 ~ 39333799 (-)
ENSDARG00000041835	ccl38a.5	20: 38279523 ~ 38280392 (+)
ENSDARG00000041917	ccl38a.4	20: 38285671 ~ 38286553 (+)
ENSDARG00000037116	cxcl12a	13: 30804367 ~ 30819715 (+)
ENSDARG00000010514	cxcr5	18: 43891051 ~ 43894087 (+)
ENSDARG00000074772	ccl44	11: 6182680 ~ 6188413 (-)
ENSDARG00000076529	mn1a	10: 4095917 ~ 4112836 (+)
ENSDARG00000079713	ccl27b	10: 2669405 ~ 2671295 (+)
ENSDARG00000040643	ccr10	24: 36673686 ~ 36680261 (-)
ENSDARG00000094002	ccl34b.4	24: 27416592 ~ 27419198 (-)
ENSDARG00000093098	ccl34b.8	24: 27450085 ~ 27452488 (-)
ENSDARG00000071499	cxcl32b.1	24: 27511734 ~ 27512851 (+)
ENSDARG00000094511	ccl20b	24: 26006730 ~ 26009612 (+)
ENSDARG00000096060	ccl39a.10	25: 25202213 ~ 25202523 (+)
ENSDARG00000070378	ccl35.2	25: 25172983 ~ 25176139 (+)
ENSDARG00000079337	NA	--
ENSDARG00000086468	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample A)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838131	GSE159709
	GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000094706

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.