Fish Spatial Expression Database

GENE ID: ENSDARG00000061937

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000061937 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000075215	vezt	4: 25912308 ~ 25946970 (+)
ENSDARG00000056386	NA	5: 25652727 ~ 25668787 (-)
ENSDARG00000021137	adgrv1	5: 48683447 ~ 48940127 (+)
ENSDARG00000079497	tcima	5: 27866649 ~ 27867657 (-)
ENSDARG00000004322	ush1ga	3: 56882832 ~ 56896702 (-)
ENSDARG00000021846	hid1a	3: 56921990 ~ 56933578 (-)
ENSDARG00000036846	anks4b	3: 60812851 ~ 60827402 (-)
ENSDARG00000069423	tmie	2: 2223837 ~ 2279311 (+)
ENSDARG00000006206	pou4f3	9: 54290896 ~ 54292162 (+)
ENSDARG00000055294	atoh1a	8: 29593986 ~ 29595615 (+)
ENSDARG00000076414	espn	8: 46939391 ~ 47088528 (+)
ENSDARG00000056458	lhfpl5b	8: 23876928 ~ 23885016 (-)
ENSDARG00000029482	ush2a	17: 29376854 ~ 29771639 (-)
ENSDARG00000059150	tmem107	14: 247456 ~ 251089 (-)
ENSDARG00000069865	grxcr1b	13: 9440326 ~ 9442942 (-)
ENSDARG00000076974	pdzd7a	13: 18701906 ~ 18783485 (+)
ENSDARG00000094454	cdh23	13: 42762226 ~ 43011856 (+)
ENSDARG00000007561	cdh23	13: 43050562 ~ 43213012 (+)
ENSDARG00000076079	ush1gb	12: 46582168 ~ 46598223 (+)
ENSDARG00000071772	si:ch211-253p2.2	12: 6542789 ~ 6551681 (-)
ENSDARG00000008127	pcdh15b	12: 6566233 ~ 6905375 (-)
ENSDARG00000075362	whrna	21: 13979033 ~ 14175838 (-)
ENSDARG00000074521	map6a	10: 32560667 ~ 32601380 (+)
ENSDARG00000076858	NA	10: 20256454 ~ 20257175 (+)
ENSDARG00000038814	myrip	24: 11112113 ~ 11325849 (-)
ENSDARG00000051876	ush1c	25: 22643954 ~ 22704233 (+)
ENSDARG00000032626	NA	--
ENSDARG00000042863	NA	--
ENSDARG00000052232	NA	--
ENSDARG00000063558	NA	--
ENSDARG00000061277	NA	--
ENSDARG00000061937	NA	--
ENSDARG00000089584	NA	--
ENSDARG00000089928	NA	--
ENSDARG00000090163	NA	--
ENSDARG00000091766	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE104057 (heart replicate1)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788518	GSE104057
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000061937

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.