Fish Spatial Expression Database

GENE ID: ENSDARG00000018687

Symbol	Location	Gene type	Genome version	Species
itga2b	3: 21350509 ~ 21382491 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000018687 (itga2b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000032639	cd36	4: 22658472 ~ 22671469 (-)
ENSDARG00000018820	flncb	4: 10066840 ~ 10130349 (+)
ENSDARG00000042069	pebp1	5: 15350954 ~ 15357819 (+)
ENSDARG00000018687	itga2b	3: 21350509 ~ 21382491 (-)
ENSDARG00000056767	itgb3a	3: 19621034 ~ 19649535 (+)
ENSDARG00000044318	itgb7	6: 39703232 ~ 39727244 (-)
ENSDARG00000039222	mpl	6: 33949280 ~ 33980881 (-)
ENSDARG00000020771	tnr	2: 35240485 ~ 35474115 (+)
ENSDARG00000022689	itgb1b.2	2: 43638983 ~ 43653328 (-)
ENSDARG00000053232	itgb1b.1	2: 43619555 ~ 43635777 (-)
ENSDARG00000019815	fn1a	9: 15362300 ~ 15424639 (-)
ENSDARG00000012942	itgb5	9: 22677503 ~ 22748015 (+)
ENSDARG00000077641	thbs3a	16: 42900238 ~ 42933332 (-)
ENSDARG00000010785	thbs1b	20: 29036328 ~ 29052391 (-)
ENSDARG00000028507	itgb4	8: 13106760 ~ 13159587 (+)
ENSDARG00000074441	gp1bb	8: 4576132 ~ 4586696 (-)
ENSDARG00000007923	ptpn1	8: 28398780 ~ 28408410 (-)
ENSDARG00000060410	thbs2a	13: 35635672 ~ 35677353 (+)
ENSDARG00000005842	cd9a	18: 7122577 ~ 7143920 (-)
ENSDARG00000077231	vwf	18: 7150144 ~ 7228004 (+)
ENSDARG00000045070	itgb3b	12: 26434478 ~ 26461744 (+)
ENSDARG00000073810	thbs2b	12: 30653047 ~ 30681927 (+)
ENSDARG00000012060	thbs3b	19: 24419693 ~ 24443867 (-)
ENSDARG00000055388	vtna	15: 28202170 ~ 28208926 (+)
ENSDARG00000092281	flnb	23: 19606291 ~ 19652915 (+)
ENSDARG00000074201	flna	23: 19759128 ~ 19809027 (+)
ENSDARG00000090638	gp9	23: 4689626 ~ 4692550 (+)
ENSDARG00000020072	thbs4b	21: 5129513 ~ 5162687 (+)
ENSDARG00000053831	vtnb	21: 39067512 ~ 39081107 (-)
ENSDARG00000002494	itgb6	11: 10975012 ~ 11020857 (+)
ENSDARG00000018285	pdpk1b	24: 37301852 ~ 37326236 (-)
ENSDARG00000071863	itgb1a	24: 1110138 ~ 1151483 (-)
ENSDARG00000018566	flnca	25: 35019693 ~ 35041057 (+)
ENSDARG00000097351	NA	--
ENSDARG00000026797	NA	--
ENSDARG00000045381	NA	--
ENSDARG00000052631	NA	--
ENSDARG00000053865	NA	--
ENSDARG00000053255	NA	--
ENSDARG00000063430	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample B)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838132	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000018687

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.