Fish Spatial Expression Database

GENE ID: ENSDARG00000018478

Symbol	Location	Gene type	Genome version	Species
agxtb	2: 22676743 ~ 22688651 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000018478 (agxtb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000012199	gpt2	7: 41887429 ~ 41901688 (+)
ENSDARG00000035603	dao.2	5: 20170960 ~ 20185665 (-)
ENSDARG00000035602	dao.1	5: 20188438 ~ 20195350 (-)
ENSDARG00000035601	dao.3	5: 20197138 ~ 20205075 (-)
ENSDARG00000005643	gcat	3: 25990052 ~ 25998243 (+)
ENSDARG00000052816	shmt1	3: 40260929 ~ 40276071 (-)
ENSDARG00000018478	agxtb	2: 22676743 ~ 22688651 (-)
ENSDARG00000019541	gpt2l	2: 3533117 ~ 3573000 (+)
ENSDARG00000027826	pudp	1: 32341484 ~ 32385665 (+)
ENSDARG00000053500	cbsa	1: 29068649 ~ 29093562 (+)
ENSDARG00000019986	grhprb	1: 19835803 ~ 19845539 (-)
ENSDARG00000027992	hao2	9: 21146862 ~ 21164617 (+)
ENSDARG00000010946	cbsb	9: 9180620 ~ 9228941 (-)
ENSDARG00000070654	pex5	16: 12064576 ~ 12097558 (-)
ENSDARG00000074287	sptlc2b	20: 5330540 ~ 5369105 (-)
ENSDARG00000038643	alas2	8: 21353878 ~ 21369028 (+)
ENSDARG00000010862	amt	8: 26396552 ~ 26408670 (+)
ENSDARG00000074698	sdsl	17: 14605794 ~ 14613711 (-)
ENSDARG00000024160	hao1	17: 4030493 ~ 4063581 (+)
ENSDARG00000018976	sptlc2a	17: 17804727 ~ 17856118 (+)
ENSDARG00000006840	gnmt	17: 48920799 ~ 48936123 (-)
ENSDARG00000068264	grhpra	14: 44777478 ~ 44790817 (-)
ENSDARG00000030743	sptlc3	13: 34804243 ~ 34862484 (-)
ENSDARG00000036239	gatm	18: 35725 ~ 46010 (-)
ENSDARG00000076225	tha1	12: 34378733 ~ 34397139 (+)
ENSDARG00000055591	pipox	15: 24150090 ~ 24178893 (-)
ENSDARG00000040314	psph	15: 413543 ~ 419597 (-)
ENSDARG00000014138	acot8	11: 1512571 ~ 1520946 (+)
ENSDARG00000021059	alas1	11: 260763 ~ 270210 (-)
ENSDARG00000042995	sptlc1	10: 5234327 ~ 5265160 (+)
ENSDARG00000058102	sardh	10: 10386435 ~ 10564968 (+)
ENSDARG00000018944	hoga1	22: 34710036 ~ 34732882 (+)
ENSDARG00000008785	dldh	25: 26877705 ~ 26893006 (-)
ENSDARG00000016717	NA	--
ENSDARG00000087194	NA	--
ENSDARG00000042096	NA	--
ENSDARG00000052643	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE159709 (Visium-sample C)	tumor	Visium	cancer	adult, zebrafish with BRAFV600E-driven melanomas	GSM4838133	GSE159709

After clicking the magnifying glass button, the expression information will be displayed below.

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
	GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
	GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000018478

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.