CI01000057_04419591_04430486 (PDE4C, CRTC1B)


Basic Information

Item Value
gene id CI01000057_04419591_04430486
gene name PDE4C, CRTC1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4419591 ~ 4430486 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04419591_04430486.mRNA
TTCGATGTGGAAAATGGATTGTCAATCGGGCGCAGTCCACTGGACCCCAGTCCAAGCTCGGGTCTGGTCCTCCAAGCAAACAGCCAGAGGCGAGAGTCTTTTCTTTACCGCTCGGACTCGGATTTCGACATCTCACCCAAGACGATGTCCAGAAACTCCTCAACTGCCAGCGAGCTTCATGGGGAGGACATGATTGTAACACCGTTTGCGCAGGTTCTTGCCAGTCTGCGTACAGTGAGGGGTAATGTTGCAGCTTTAACCCACATGCAAGATAGAAGCAACAAGAGACCATCAGGCACTAACCCTCCATCTGCCTGTAAAACAAACCTGTCAGATGAATCATATCAAAAACTCGCTGTCGAGACTCTTGAAGAGCTGGACTGGTGTCTGGACCAGCTGGAGACCCTGCAAACACGTAACTCTGTCAGTGAAATGGCCTCCAATAAGTTTAAAAGAATGCTCAACAGGGAGCTAACTCAGCTGTCTGAGACAAGCCGGTCAGGAAACCAAGTGTCGGAGTTCATAGCAAGCACAATTTTACAAAAACAGCATGATGTGGAGGTTTTGTCAGCAGCTTGTAAGGAGGAGAAAAAGCGCCGTCCGATGTCTCAGATAAGTGGAGTGAGAAAACTGAGCCCCAGCCCGAGTCTCCCATCAACTTGCATCCCACGATTTGGTGTCAACACGGAGCACGAGAGCCTCCTGGCCAAGGAGCTTGAGGACGTGGATCGATGGGGTATAGATATTTTTAAGATAGCGGAATATTCTGGGAATCGGCCACTGACAGTCATAATGTACACCATTTTTCAGGAGCGAGATTTGCTCAAATCCTTTAAAATCCCACCGGACACCTTCTTAACTTTTCTGATGACTTTGGAAGACCACTACCATGCAGACGTGGCCTACCATAACAACATCCACGCAGCAGACGTTGTGCAGTCTACTCACGTTCTTCTTTCCACACCTGCCTTAGAGGTCTGCTTGGATATCATGGCTGCTCTGTTTGCCAGTGCTATTCATGATGTGGATCATCCAGGAGTGTCCAACCAGTTCCTCATTAATACAAACTCTGAACTGGCTCTCATGTATAATGACGCCTCAGTGTTGGAGAATCATCACTTGGCTGTCGGCTTCAAGCTTCTACAGGAGGAGAACTGTGATATCTTTTGTAATCTCAGCAAGAAACAACGACAGTCCCTGCGACAGATGACTATAGATATGGTATTAGCCACTGATATGTCCAAACACATGAATTTTCTGGCTGATCTGAAGACAATGGTGGAAACTAAAAAAGTGACCAGTCTAGGAGTCTTACTGCTGGATAACTACTCAGACCGAATACAGGTATTGCAGGTGCTCCAGAACATGGTGCATTGTGCTGACCTCAGCAACCCCACGAAACCCCTGGAGCTCTATCGACAGTGGACAGATCGCATCATGGTGGAGCTTTTTAGTCAGGGTGACCATGAGCGTGACAAGGGCATAGAAATCAGCCCCATGTGTGACAAACTCACTGCTTCTGTGGAAAAAACTCAGGTGGGATTCATCGATTACATTGTCCACCCTTTATGGGAAACATGGGCTGATCTGGTCCATCCAGATGCTCAGGACATTCTAGATACATTAGAGGACAACCGAGAATGGTACCAGAGCATGATCCCACGCAGCCCATCACCCACCCCCGAAGAGCAGGACTCACGGGCCATGGTGGGCTCAGCCGGAGAAAAGTTCCAGTTCGAGCTGACTCTGGAGGAAGAAGATGGAGAGTTAGAGGCTGAAGAGGAGCACATGGATTCAGAAAGATCAAGGACTATGACGGACACCAGGCATCCACAAATGTCCTCCCTTGGAGTCACTCCCATTTTAGACAGCAGCGAAAGAGAAATGGACCAAGAAATGACCAGCGTATCCATCCTGCAGTTGGAAACT

Function

symbol description
crtc1b Predicted to enable cAMP response element binding protein binding activity. Predicted to be involved in positive regulation of CREB transcription factor activity and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within protein homotetramerization. Predicted to be active in cytoplasm and nucleus. Orthologous to human CRTC1 (CREB regulated transcription coactivator 1).
pde4c Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in signal transduction. Located in extracellular space.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K15309 CRTC1, TORC1; CREB-regulated transcription coactivator 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04419591_04430486.mRNA True 1929 mRNA 0.49 14 4419591 4430486

Neighbor

gene id symbol gene type direction distance location
CI01000057_04364304_04364681 NA coding upstream 54717 4359098 ~ 4365796 (+)
CI01000057_04357565_04358136 NA coding upstream 61226 4357565 ~ 4359044 (+)
CI01000057_04218508_04219283 GA45B, GADD45B, GADD45BA coding upstream 199697 4218334 ~ 4219894 (+)
CI01000057_04202045_04205390 VMAC coding upstream 214112 4201772 ~ 4205479 (+)
CI01000057_04105710_04123101 RANBP3A, RANBP3 coding upstream 295873 4105710 ~ 4123718 (+)
CI01000057_04443549_04450402 RAB3A, RAB3A.L, RAB3AB coding downstream 13063 4443549 ~ 4451138 (+)
CI01000057_04473417_04481843 KLHL26 coding downstream 42736 4473222 ~ 4481894 (+)
CI01000057_04491831_04508031 CRTC1 coding downstream 61345 4491831 ~ 4508535 (+)
CI01000057_04547933_04555967 RAB43 coding downstream 117271 4547757 ~ 4555988 (+)
CI01000057_04601541_04604168 NA coding downstream 170684 4601170 ~ 4604419 (+)
G245478 NA non-coding upstream 32263 4283935 ~ 4387328 (+)
G245586 NA non-coding upstream 156131 4263225 ~ 4263460 (+)
G245583 NA non-coding upstream 158773 4260494 ~ 4260818 (+)
G245580 NA non-coding upstream 163512 4255860 ~ 4256079 (+)
G245467 NA non-coding downstream 24663 4455149 ~ 4457859 (+)
G245479 NA non-coding downstream 54797 4485283 ~ 4486106 (+)
G245457 NA non-coding downstream 126223 4556709 ~ 4557013 (+)
G245464 NA non-coding downstream 149979 4580465 ~ 4583262 (+)
G245644 NA non-coding downstream 167466 4597952 ~ 4598411 (+)
G245486 NA other upstream 207510 4209897 ~ 4212081 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 574900 3842028 ~ 3844691 (+)
G245401 NA other upstream 881149 3537569 ~ 3538442 (+)
G245231 NA other upstream 1127029 3087096 ~ 3292562 (+)
G243991 NA other upstream 1767031 2635237 ~ 2652560 (+)
G245725 NA other downstream 668199 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1143418 5564489 ~ 5579843 (+)
G245856 NA other downstream 1207168 5637654 ~ 5643340 (+)
G245857 NA other downstream 1224790 5655276 ~ 5657239 (+)
CI01000057_05912175_05916639 NA other downstream 1481327 5911767 ~ 5917211 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003209 pde4cb coding NC_007122.7 CM002895.2 6684968 ~ 6794144 (+)