CI01000057_04443549_04450402 (RAB3A, RAB3A.L, RAB3AB)


Basic Information

Item Value
gene id CI01000057_04443549_04450402
gene name RAB3A, RAB3A.L, RAB3AB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4443549 ~ 4451138 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04443549_04450402.mRNA
ATGGCTTCAGCTACAGATAACCGTTATGGACAAAAGGAGTCTTCCGACCAGAACTTTGATTACATGTTCAAAATCCTGATCATCGGGAACAGCAGCGTTGGGAAGACAAGCTTTCTATTTCGTTATGCAGATGACTCCTTCACCCCTGCATTTGTAAGCACAGTGGGCATCGACTTCAAGGTGAAGACCATCTACAGGAACGACAAGAGGATAAAGCTGCAGATCTGGGACACAGCAGGACAGGAACGCTACAGAACCATCACCACTGCCTACTACCGTGGAGCCATGGGCTTCATCCTCATGTACGACATCACCAACGAGGAGTCTTTCGCTGCAGTGCAAGACTGGTCCACACAGATTAAGACATACTCATGGGATAACGCTCAGGTGCTTCTAGTGGGCAACAAGTGTGACATGGAGGATGAGAGGGTGGTGGCCTCTGAGAGGGGCCGACAGCTATCCGAGCATCTCGGTTTTGAGTATTTTGAGGCCAGTGCCAAGGACAACATTAATGTTAAACAAACCTTCGAGCGGCTGGTAGACATAATCTGTGAGAAGATGTCAGAGAGCCTGGATGCTGCTGATCCTGCAGTGACGGGAGCCAAACAGGGGCCACAGCTCACGGAGCAGCCTGCCGCTCCGCACCAGGACTGCGCCTGCTGAAAATCCCACAGCTCTTTCTGCACTGCCTTGCACCAACACACAAAAAACAAGTTTAGGTATTTAAAAAGAACAAGAAACATAAAACCTTCAGTTCTCCTTACTGCCTCTGGCCACACCCCCTCCTCTCTGATGTCTTATTTAACACCTCAAGCTTTTATTCAACGTGCAATCCATTAAATTTTAAAAGGAAAGCCATAGCACCCTTTAAGGGTTTGATTAGGCTTGATTAAGCCCGTGTTATGTTTTAAAGACTTAATGATTAGGTCTAAGTTTAAATTTTAGGGGTGTGTTATTAGGCCGTAGCACACAGAATCAGTTATTCTTTCATTTTTACTTCATATTCTATGATTTTTTTTTTCTTGTACTCTTCCATATCCTTATTTATGAACAAATATAAAAATAGAGGAATGGGGAGAGATTTCTGTATATTTATTCCAAAAGTGTACATAATGAATACAGTTCAGTATTTAAATGATACAGTAAGAGATACATATCGAAAAAATTTAGTTTTTTTTGTTTTGAAAATGACCAATTCGGTCAAATATAAAGAAAGTTATAGAAGTCAATTAATGCTGTTCTCATGGTAATTCTTTGCAGTGTGCATCACCAACCTTGCTTATTTGTATCTGTGACATTGTACCTTGTTCACTGCCTTGCCTCATGTAATTTCAGTCCCGGGACTGAAAGCCAGATATCATACACAAACATTCCTTAATGTAAATTTGCATGGAAGGAA

Function

symbol description
rab3ab Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including maintenance of presynaptic active zone structure; regulation of vesicle-mediated transport; and secretion by cell. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Predicted to be anchored component of synaptic vesicle membrane. Orthologous to human RAB3A (RAB3A, member RAS oncogene family).
rab3a Enables GTPase activity and myosin V binding activity. Involved in several processes, including acrosomal vesicle exocytosis; plasma membrane repair; and regulation of plasma membrane repair. Located in perinuclear region of cytoplasm.

GO:

id name namespace
GO:0008021 synaptic vesicle cellular_component

KEGG:

id description
K07882 RAB3A; Ras-related protein Rab-3A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04443549_04450402.mRNA True 1399 mRNA 0.42 4 4443549 4451138

Neighbor

gene id symbol gene type direction distance location
CI01000057_04419591_04430486 PDE4C, CRTC1B coding upstream 13063 4419591 ~ 4430486 (+)
CI01000057_04364304_04364681 NA coding upstream 78675 4359098 ~ 4365796 (+)
CI01000057_04357565_04358136 NA coding upstream 85184 4357565 ~ 4359044 (+)
CI01000057_04218508_04219283 GA45B, GADD45B, GADD45BA coding upstream 223655 4218334 ~ 4219894 (+)
CI01000057_04202045_04205390 VMAC coding upstream 238070 4201772 ~ 4205479 (+)
CI01000057_04473417_04481843 KLHL26 coding downstream 22084 4473222 ~ 4481894 (+)
CI01000057_04491831_04508031 CRTC1 coding downstream 40693 4491831 ~ 4508535 (+)
CI01000057_04547933_04555967 RAB43 coding downstream 96619 4547757 ~ 4555988 (+)
CI01000057_04601541_04604168 NA coding downstream 150032 4601170 ~ 4604419 (+)
CI01000057_04612115_04631293 RAF1, RAF1B coding downstream 160716 4611854 ~ 4631871 (+)
G245478 NA non-coding upstream 56221 4283935 ~ 4387328 (+)
G245586 NA non-coding upstream 180089 4263225 ~ 4263460 (+)
G245583 NA non-coding upstream 182731 4260494 ~ 4260818 (+)
G245580 NA non-coding upstream 187470 4255860 ~ 4256079 (+)
G245467 NA non-coding downstream 4011 4455149 ~ 4457859 (+)
G245479 NA non-coding downstream 34145 4485283 ~ 4486106 (+)
G245457 NA non-coding downstream 105571 4556709 ~ 4557013 (+)
G245464 NA non-coding downstream 129327 4580465 ~ 4583262 (+)
G245644 NA non-coding downstream 146814 4597952 ~ 4598411 (+)
G245486 NA other upstream 231468 4209897 ~ 4212081 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 598858 3842028 ~ 3844691 (+)
G245401 NA other upstream 905107 3537569 ~ 3538442 (+)
G245231 NA other upstream 1150987 3087096 ~ 3292562 (+)
G243991 NA other upstream 1790989 2635237 ~ 2652560 (+)
G245725 NA other downstream 647547 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1122766 5564489 ~ 5579843 (+)
G245856 NA other downstream 1186516 5637654 ~ 5643340 (+)
G245857 NA other downstream 1204138 5655276 ~ 5657239 (+)
CI01000057_05912175_05916639 NA other downstream 1460675 5911767 ~ 5917211 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003211 rab3ab coding NC_007122.7 CM002895.2 6819050 ~ 6850593 (+)
bowfin (Amia calva) AMCG00006074 rab3a,rab3ab,LOC105900867,LOC107553558,LOC107680521 coding CM030142.1 CM030142.1 15753228 ~ 15766640 (+)