Gene
RNA
| Item | Value |
|---|---|
| gene id | G244367 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 631120 ~ 631439 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU277390 | True | 320 | lncRNA | 0.47 | 1 | 631120 | 631439 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_00628126_00628851 | NA | coding | downstream | 954 | 627715 ~ 630166 (-) |
| CI01000057_00561471_00562830 | NA | coding | downstream | 68263 | 561229 ~ 562857 (-) |
| CI01000057_00534471_00559759 | NA | coding | downstream | 71361 | 533588 ~ 559759 (-) |
| CI01000057_00475661_00476027 | NA | coding | downstream | 155093 | 475392 ~ 476027 (-) |
| CI01000057_00459703_00467870 | ABHD6A, ABHD6 | coding | downstream | 163250 | 458943 ~ 467870 (-) |
| CI01000057_00873279_00873578 | NA | coding | upstream | 241835 | 873274 ~ 873578 (-) |
| CI01000057_00938618_00949690 | NA | coding | upstream | 306632 | 938071 ~ 949779 (-) |
| CI01000057_00956994_00965947 | NR1D4B | coding | upstream | 324194 | 955633 ~ 965947 (-) |
| CI01000057_01083731_01092073 | NA | coding | upstream | 452275 | 1083714 ~ 1092631 (-) |
| CI01000057_01145522_01147560 | NA | coding | upstream | 512623 | 1144062 ~ 1147772 (-) |
| G244360 | NA | non-coding | downstream | 54975 | 575867 ~ 576145 (-) |
| G244359 | NA | non-coding | downstream | 56235 | 574536 ~ 574885 (-) |
| G244339 | NA | non-coding | downstream | 150703 | 480197 ~ 480417 (-) |
| G244338 | NA | non-coding | downstream | 150966 | 479943 ~ 480154 (-) |
| G244370 | NA | non-coding | upstream | 1137 | 632576 ~ 632905 (-) |
| G244380 | NA | non-coding | upstream | 122491 | 753930 ~ 759844 (-) |
| G244391 | NA | non-coding | upstream | 206122 | 837561 ~ 838099 (-) |
| G244462 | NA | non-coding | upstream | 206696 | 838135 ~ 839154 (-) |
| G244463 | NA | non-coding | upstream | 209357 | 840796 ~ 841279 (-) |
| G244358 | NA | other | downstream | 60092 | 570530 ~ 571028 (-) |
| CI01000057_01801708_01806454 | LHFPL5, LHFPL5A | other | upstream | 1170145 | 1801528 ~ 1806454 (-) |
| CI01000057_01904867_01921400 | NA | other | upstream | 1288617 | 1904533 ~ 1921905 (-) |
| CI01000057_03887278_03892054 | ABHD8B, ABHD8 | other | upstream | 3260296 | 3887203 ~ 3892054 (-) |
| CI01000057_04927533_04931127 | CDK4 | other | upstream | 4297305 | 4927533 ~ 4931420 (-) |
| G246780 | NA | other | upstream | 4579671 | 5086312 ~ 5283617 (-) |
