G244703


Basic Information

Item Value
gene id G244703
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1445785 ~ 1446353 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU277806
TTTATATATATTAATATATAAGGAGTTATATAGGCAACATAAATATATTATGTAATTTGAAAAAAAAAAAAAAAAAATTATATTCACTGTCATTTGTTCTTACTGCATAGCTCTTATTCAGTCTAGACATACAGCACATTAATGGGAGATGACATCTTTATATATTTCCATCAACCATTTAACAAGATTAAAAGGATTTATAACAAACTAAAATTATTATTCTAAAAGAAAAAGAAGAAATGTTTTTAATTCAGTAACTGTAACTGTTCTGGCAGATTTATGCATCAAAATTAATGCCACATAATGCTGCAAACATATTTGTCACAACCAGAGGGAGATGAAGGATTGTAAAGGATTGTGGTCATAGAGTTCTCAGTGTATGTCATCTCTGTCGCTGGCTCTCTCTCAGTCCTTCCTAAACACATTTCAGGTCCAGATTTACAAGTTCTCAGACACTGTTACATGAGATAGTTCCATCATTTCTTTTACGGGATGAAATTTTTGATCCTTTCTCGTCAACACACCAGCACTGGCCTCTCTGCATTCCTCTTGATGAGCGACACTGTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU277806 True 569 lncRNA 0.33 1 1445785 1446353

Neighbor

gene id symbol gene type direction distance location
CI01000057_01356170_01359401 NA coding downstream 85815 1355409 ~ 1359970 (-)
CI01000057_01261251_01262315 NA coding downstream 183470 1260686 ~ 1262315 (-)
CI01000057_01252690_01256408 ZNF740A coding downstream 189377 1252647 ~ 1256408 (-)
CI01000057_01235433_01244747 NA coding downstream 200603 1235177 ~ 1245182 (-)
CI01000057_01219430_01223491 HNRNPA1, HNRNPA1A coding downstream 222294 1219430 ~ 1223491 (-)
CI01000057_01471460_01487413 NA coding upstream 24774 1471127 ~ 1487762 (-)
CI01000057_01542990_01546030 SLC2A10 coding upstream 96444 1542797 ~ 1546030 (-)
CI01000057_01559593_01572133 NA coding upstream 113194 1559547 ~ 1572850 (-)
CI01000057_01707526_01708449 NA coding upstream 261142 1707495 ~ 1708449 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A coding upstream 355175 1801528 ~ 1806454 (-)
G244702 NA non-coding downstream 988 1444022 ~ 1444797 (-)
G244675 NA non-coding downstream 2256 1443198 ~ 1443529 (-)
G244652 NA non-coding downstream 57205 1387467 ~ 1388580 (-)
G244637 NA non-coding downstream 115439 1329775 ~ 1330346 (-)
G244706 NA non-coding upstream 1990 1448343 ~ 1448682 (-)
G244720 NA non-coding upstream 66630 1512983 ~ 1523985 (-)
G244730 NA non-coding upstream 81679 1528032 ~ 1528713 (-)
G244731 NA non-coding upstream 82588 1528941 ~ 1529337 (-)
G244732 NA non-coding upstream 84240 1530593 ~ 1530797 (-)
G244358 NA other downstream 874757 570530 ~ 571028 (-)
CI01000057_01904867_01921400 NA other upstream 473703 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 2445382 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 3482391 4927533 ~ 4931420 (-)
G246780 NA other upstream 3764757 5086312 ~ 5283617 (-)

Expression


Co-expression Network