G250251


Basic Information

Item Value
gene id G250251
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3607612 ~ 3607834 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU284010
GTTCTGTTTAGTTCATGTCTAGAGTTTGTTTTTCATTGGTCACATGTTCCCCCTTGTTCTCAGTTTCCCGTCACTTGTTTGTCTCCTTGGTTACAGATTTGATCAGTGTTTGAGTTCAGCTGTGTCTTGTTAATTAGTCTTGTTAAATCTTCTGTTCACTGTGTATTTAAGCCCTGTGTTTGTTCTGTTCAGTTGTCAGTTCTTTGTTACGCCTACGTTGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU284010 True 223 lncRNA 0.39 1 3607612 3607834

Neighbor

gene id symbol gene type direction distance location
CI01000058_03239666_03330001 CDH4 coding downstream 277611 3239666 ~ 3330003 (-)
CI01000058_03154548_03160071 NA coding downstream 447541 3154539 ~ 3160071 (-)
CI01000058_03136045_03137264 PRELP coding downstream 470348 3135699 ~ 3137264 (-)
CI01000058_03128328_03131680 NA coding downstream 475750 3128275 ~ 3131862 (-)
CI01000058_03112748_03117231 IL10 coding downstream 490381 3112232 ~ 3117231 (-)
CI01000058_03668662_03671701 FEZF2 coding upstream 60712 3668546 ~ 3672185 (-)
CI01000058_03684461_03827727 CADPS, CADPSA coding upstream 76627 3684461 ~ 3827727 (-)
CI01000058_03904018_03906800 THOC7 coding upstream 296063 3903897 ~ 3908108 (-)
CI01000058_03950901_03956376 PSMD6 coding upstream 343067 3950901 ~ 3956376 (-)
CI01000058_03977379_03991942 PRICKLE2, PRICKLE2B coding upstream 369030 3976864 ~ 3991942 (-)
G250250 NA non-coding downstream 2128 3605273 ~ 3605484 (-)
G250242 NA non-coding downstream 37188 3570209 ~ 3570424 (-)
G249560 NA non-coding downstream 376558 3230557 ~ 3231054 (-)
G249573 NA non-coding downstream 407757 3199639 ~ 3199855 (-)
G250257 NA non-coding upstream 28979 3636813 ~ 3637097 (-)
G250225 NA non-coding upstream 31339 3639173 ~ 3639906 (-)
G250259 NA non-coding upstream 45847 3653681 ~ 3653990 (-)
G250260 NA non-coding upstream 46228 3654062 ~ 3654576 (-)
G250268 NA non-coding upstream 65902 3673736 ~ 3673966 (-)
CI01000058_02859435_02860658 FAM72A other downstream 746419 2858483 ~ 2861491 (-)
G247592 NA other downstream 2952663 646443 ~ 654949 (-)
G250230 NA other upstream 80809 3688643 ~ 3696711 (-)

Expression


Co-expression Network