XLOC_010240


Basic Information

Item Value
gene id XLOC_010240
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46555394 ~ 46569152 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022032
GTTTTTTTAATgcaagctttatttttttaaaagtgaaattgaTATCCAAGCGGTACAGGTATGTGGTCCACAGTGGGTTTACTCAACTTACAAGTTGTGCATTGTGCATGACGAGCtctctcatcatttaaagttttcACTATTTGAAAAGTTGACCAGAAGTTTGCCTGACTTTTTCAGTTTTAAGTTCGCCtttgccattttttttctttatgctaTCTATTGCACTTTGCTGGAAATCTCAAACTTGCCTCATTAAACTTTGTTTTGCAGTTTCTTCTAAAGCAGGCTCAGGCTCAAATGCAGGGCTCTAAGCTAAACACCCATTAAAATCTGTTAAAACCAATGATCACTTGAATCAAATCAAAGCCTGGAAAGTCCATTGCTATGACCCCAAAACAAAGctttatatacattttagaaGCGCCTTCAAGATTATTGTATAGCCAAGGGTTGATTTTTTTGGCCACTTTCTTTGGGGTTTTGTCTGGTCTAAATACAGGCCAGCCTGTGCCGCTTGAATAGTTTAGCACAACTTCATTCACTTTACAAGCTTCCAAAGCCTGATTCAGATGCTCAATAATTTTATCCTTCTTGTTTTCAACATTACCTACTTTATAGTCACCCTTTTTATCAGTTTCTAACATAGGGATTCCCAGTTTAAAGTTGTTTTTCTGAACAAAAACAATCTTTCCTCTTACTTCTCTAATTCGCGGTATTTTATTTCTAACCCAACATCCAGGATCATTTTTAAGCTGATTTGCAACATCGTCTGGAAATGGGCCCTTTGACTCGAGCTTGACTCTTAGCAACACTGTCTCTGATTTATGTTGAGACAAAAAACCCTTAACTATGTTGAGAACATTAGCGAACGTTGTATGTTGTGAAATCACACCATGCACAACTTTCAGGTTCCTCCCCTTCACTCTCAATTCCAGGTAGCGTATGCCGGCGTTCAGCTGATTCTCCAGTAACCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022032 True 977 lncRNA 0.38 2 46555394 46569152

Neighbor

gene id symbol gene type direction distance location
XLOC_010239 rpz4 coding upstream 51576 46497149 ~ 46503818 (+)
XLOC_010238 rpz5 coding upstream 59101 46492756 ~ 46496293 (+)
XLOC_010237 rpz3 coding upstream 90298 46453176 ~ 46465096 (+)
XLOC_010236 rpz6 coding upstream 120356 46430627 ~ 46435038 (+)
XLOC_010235 rpz coding upstream 131552 46401576 ~ 46423842 (+)
XLOC_010242 ubqln4 coding downstream 96922 46666074 ~ 46681170 (+)
XLOC_010243 lamtor2 coding downstream 115703 46684855 ~ 46691206 (+)
XLOC_010244 rab25b coding downstream 126625 46695777 ~ 46714052 (+)
XLOC_010245 rab11al coding downstream 155935 46725087 ~ 46741779 (+)
XLOC_010246 NA coding downstream 221525 46790677 ~ 46794172 (+)
XLOC_010233 NA non-coding upstream 273238 46276944 ~ 46282156 (+)
XLOC_010232 NA non-coding upstream 284506 46269724 ~ 46270888 (+)
XLOC_010228 NA non-coding upstream 564552 45988431 ~ 45990842 (+)
XLOC_010225 NA non-coding upstream 743070 45787042 ~ 45812324 (+)
XLOC_010222 CU459129.1 non-coding upstream 888542 45666735 ~ 45666852 (+)
XLOC_010247 NA non-coding downstream 227274 46796426 ~ 46797326 (+)
XLOC_010249 NA non-coding downstream 257436 46826588 ~ 46830237 (+)
XLOC_010251 CR848802.1 non-coding downstream 443189 47012341 ~ 47012457 (+)
XLOC_010255 NA non-coding downstream 814643 47383795 ~ 47389378 (+)

Expression


Co-expression Network