G287476


Basic Information

Item Value
gene id G287476
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000073
NCBI id null
chromosome length 1307889
location 346929 ~ 349227 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU325917
TTTGAGTTCTAAGCGAATGAAATCTGGATTGCCCAGGTTTTCCAGAAAGACGCCATGTGAGGCTGAAGTCTTAAAATAGAAGGAAACGTCTGCGCTGGTCTCGGCTTGGAAGGTGGGAAAATGAAGATAAGATGCAGGTGTGTTGAAGGACGCTGCGTTCCAGTAGTGACGATCTCCTTGGCAGCGGAGTGGCCCAACGGTGAGTTTGGCTTCGGATCCAGAGCGGTGTATATCGCCAACCACTACCTGATTGACAGGCAGATGATCCTTATACATCAACATACCAGCATCCTCTTTCCATTGCCTCAGATCCGCATCACAGTTGCAGTAGTATCTGGGATCTGTGCAGTTGCGTTCAATGCCACAGGCACATTTCTGCACGCCTGGTCCTGAGCCGCCCCAGTAGAAGTGCTTCTCGTTCCCCCTGCCGACCCACCACGTGGACGGAGAACCGTCTGGTGAGTTGAGCAGGTGTGATTTGTAGCACATGTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU325917 True 492 lncRNA 0.52 4 346929 349227

Neighbor

gene id symbol gene type direction distance location
CI01000073_00334163_00334633 NA coding upstream 11742 333832 ~ 335187 (+)
CI01000073_00275690_00276754 NA coding upstream 69104 275690 ~ 277825 (+)
CI01000073_00262918_00263376 NA coding upstream 83312 262918 ~ 263617 (+)
CI01000073_00249780_00250877 NA coding upstream 95779 249780 ~ 251150 (+)
CI01000073_00116439_00125912 ACVR2B coding upstream 220827 116439 ~ 126102 (+)
CI01000073_00384381_00387601 VIML coding downstream 35055 384282 ~ 387601 (+)
CI01000073_00396614_00407516 NA coding downstream 46587 395814 ~ 407946 (+)
CI01000073_00478931_00488750 PDE1C, PDE1CB coding downstream 129629 478856 ~ 488754 (+)
CI01000073_00496969_00501063 NA coding downstream 147742 496969 ~ 501206 (+)
CI01000073_00509393_00517498 MCM6L coding downstream 160166 509393 ~ 517611 (+)
G287471 NA non-coding upstream 1339 341834 ~ 345590 (+)
G287456 NA non-coding upstream 17368 329252 ~ 329561 (+)
G287457 NA non-coding upstream 19592 323693 ~ 327337 (+)
G287464 NA non-coding upstream 32755 313673 ~ 314174 (+)
G287459 NA non-coding upstream 42711 303990 ~ 304218 (+)
G287609 NA non-coding downstream 32109 381336 ~ 381560 (+)
G287627 NA non-coding downstream 34495 383722 ~ 383925 (+)
G287670 NA non-coding downstream 154348 503575 ~ 504488 (+)
G287672 NA non-coding downstream 158951 508178 ~ 508602 (+)
G287685 NA non-coding downstream 211359 560586 ~ 560917 (+)
G287391 NA other upstream 147157 190944 ~ 199772 (+)
CI01000073_00048073_00049706 NA other upstream 256206 47933 ~ 50512 (+)
G287638 NA other downstream 359817 709044 ~ 718401 (+)

Expression


Co-expression Network