G289003


Basic Information

Item Value
gene id G289003
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 15536 ~ 16452 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU327765
GACAGTTTTCAACAATATTTTATTTGAACACAGAATCTCCTGCAGTTCCTGAAGCGCATCAGTGCTACAGTCTACTTCAGCTTCTTCTTGGGGCGCAGGTTGTTGGTGTGGCCGCACTTCTTCTTGCGGCAGTTGACGGCACGGGGGTGCAGACGGGCGTAACACCTGAGACTTGCGGCAGATCATCTTCTCGCAGTTGTATTTCTGGGCCAGCTGTCTGAGGGAAGGCTCGATGATGCCTCCTCTGAGACGCAGCACCAGGTGGAGGGTGGACTCTGAGGAATAAAAATAAAATAGTCAATTAAAATGATGCCGTCGTGACCAACAGCAAATGTTATGTGTATATATGTATGTATATAAAAAGACACTGGATAAACACCTTTCTGAATGTTGTAGTCTGAAAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGTGGGATGCCTGAGGAACAAAGACATATTAGTGGTCCGACCAAAAAAAAAAAAAAAGTCATACTTAATATTCAGCCTTTATTTTTATACTAATGCCACATTCATACACACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTACCGGTTAAAGTTTTCACAAAGATCTGCATTTTGCCACTGAAACACAGAGAAAAGAAAGAAAATCAGTATCATTCATAGTGACTTTCAGCATCAAACATCAGATACTCATCAGTGTCTGTCAAGTTCACACGAGCTTTCAGCAATAATCACAGTATGAAAAGTAGCAAAATACCAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU327765 True 817 lncRNA 0.44 2 15536 16452

Neighbor

gene id symbol gene type direction distance location
CI01000075_00022145_00044289 NA coding upstream 4495 20947 ~ 44289 (-)
CI01000075_00059491_00078552 UPF1, UPF1.S coding upstream 43039 59491 ~ 78552 (-)
CI01000075_00080935_00083813 NA coding upstream 63634 80086 ~ 86148 (-)
CI01000075_00142446_00146058 LOXL5B coding upstream 125315 141767 ~ 146058 (-)
CI01000075_00152252_00155011 NMRK2 coding upstream 135470 151922 ~ 155130 (-)
G289016 NA non-coding downstream 1904 12670 ~ 13632 (-)
G289002 NA non-coding upstream 77077 93529 ~ 97041 (-)
G289027 NA non-coding upstream 81895 98347 ~ 98554 (-)
G289035 NA non-coding upstream 109368 125820 ~ 129301 (-)
G289072 NA non-coding upstream 213318 229770 ~ 230171 (-)
G289036 NA other upstream 92251 108703 ~ 114605 (-)
CI01000075_00275752_00278496 NA other upstream 259901 275238 ~ 278542 (-)
CI01000075_00307523_00328194 NA other upstream 304058 307523 ~ 331562 (-)
G289167 NA other upstream 753642 770094 ~ 788399 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G321330 NA non-coding NC_047615.1 CM018561.1 16040881 ~ 16041741 (-)