G289072


Basic Information

Item Value
gene id G289072
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 229770 ~ 230171 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU327854
CTCAAAACAGTAAGTCTTATTGTTTAAATCTCGTTTTGTTGATTTACCGCGAGTACCATGTTTTACCATGTCTAATATTGATCTAGCTTACTGCAGTGTGCAACAAGTGTCTCATAGCATCCGCCGAGCGAATGTAGAGTAGCATTATAACAACTTTCAACACACAAATGTATCTAATATGATAAACAGCGCTGTGTTACCCCACATACGCTTGACCGGAAGAAGCGGAAGCGACGACTGCGGCATAATAAAAGTCCCGCTGCTCTTGAGCCGTGTGTCGCACTCGTCTCTCATTAGCAATCGCTCCAGAGGCCTCGTTCAGCTCCCACATCACTCACCCTGCTCTGCTTCATACTACAGTAACGCTAATAATCTCATCCATGATCGTGATTTCTGCCCGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327854 True 402 lncRNA 0.45 1 229770 230171

Neighbor

gene id symbol gene type direction distance location
CI01000075_00164716_00172975 ATCAYB, ATCAY coding downstream 56795 164361 ~ 172975 (-)
CI01000075_00152252_00155011 NMRK2 coding downstream 74640 151922 ~ 155130 (-)
CI01000075_00142446_00146058 LOXL5B coding downstream 83712 141767 ~ 146058 (-)
CI01000075_00080935_00083813 NA coding downstream 143622 80086 ~ 86148 (-)
CI01000075_00059491_00078552 UPF1, UPF1.S coding downstream 151218 59491 ~ 78552 (-)
CI01000075_00267234_00274802 CIB2, CIB3 coding upstream 36945 267116 ~ 274802 (-)
CI01000075_00275752_00278496 NA coding upstream 45067 275238 ~ 278542 (-)
CI01000075_00281734_00287747 NA coding upstream 51374 281545 ~ 287772 (-)
CI01000075_00305485_00307473 NA coding upstream 75123 305294 ~ 308340 (-)
CI01000075_00307523_00328194 NA coding upstream 77352 307523 ~ 331562 (-)
G289035 NA non-coding downstream 100469 125820 ~ 129301 (-)
G289027 NA non-coding downstream 131216 98347 ~ 98554 (-)
G289002 NA non-coding downstream 132729 93529 ~ 97041 (-)
CI01000075_00022145_00044289 NA non-coding downstream 207435 20947 ~ 44289 (-)
G289003 NA non-coding downstream 213318 15536 ~ 16452 (-)
G289060 NA non-coding upstream 22714 252885 ~ 256328 (-)
G289076 NA non-coding upstream 41223 271394 ~ 273130 (-)
G289099 NA non-coding upstream 169674 399845 ~ 401941 (-)
CI01000075_00385897_00442260 HCN2 non-coding upstream 187316 384154 ~ 442260 (-)
G289036 NA other downstream 115165 108703 ~ 114605 (-)
G289167 NA other upstream 539923 770094 ~ 788399 (-)
G289427 NA other upstream 1262152 1492323 ~ 1515938 (-)

Expression


Co-expression Network