G289102


Basic Information

Item Value
gene id G289102
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 519465 ~ 614366 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU327891
AAGAAAGTGTAAACTGGCGTCGCGTCAATTACACTTTTTCCGTAAGTTGAATAGGTAAGGCGCATGACGTAGTGTCAGCTTTGTGAACTGCAAGAGGTTTACACTTTCTGCATATGTTGAATATGGAAGGTGGTCTGGCGGAAGCTTGATATTTGACTTCATAACTTTTTTTAAATATGGATATTTTTTTACACAAACGCATCGCTTCGCTTCAGAAGGCCTTTATTAACCCCCTGGAGCCGTGTGGAGTACACGTTTATGATGGATGGATGTAGATGGAAGCACTTTGTTCAGCTGATACTCGTTGATCCTGTTCACTGCCATTATAAAGCCCGGATGCGTCAGGATATTTATTAATATTTCTCCGATTGTCTTCGTCAGAAACAAGAAAGTCATATACACCTAGGATGGCTTGAGGGTGAGTAAAGCTTGGGCTAATTTTCATTTCAAAGTGAACTAATCCTTTAAGTCATGTCTATTTGGGTAGAATACGAAATCATTCATATGTATAAGCTGTTGTAGTGACTGTTTCAGGAAACTGAGGCAGGAGGCGTCAGTAGCTCTCTGTCTGTGGATGTAGGCCGGATGGGGTGGAATTGGAGGATGGGTGGTGATCTGATTTGGGACAAGGCCAGACAGCAGGATTAGTGGACTGTAGATAGACTGTGATTATCTAAGCCTGAACGCACCACTGTTGTGAGCACTATCTGCCATGTAACTTGCCTCTTCCTGATATTCTGTCCTTGTACTAGTGAACATTTTTTCTTTTCACAGGAAAATAATATTTGTATTGCTCAGAGGTTGCTCTTTACATACTCTACTGTTCAATAGTTTGGAGTCGGTTTGATTTTTAAAATATTTTTAAGTCTCTTATGCTCACCGAGGCGGCATTTTTTGGATCAAAAATACAAACAGTAATAATGCATCATTACTCCAGTCTTCAGTGTCACATGATCTTTCAGAAATCATTCTAATATGATGATTTGCTGCTCAAGAAACATGTTGAAAAAACAGTTGTACTGCTTCATATTTATGTGAAAATCATGATTTTTTTGATCAATTTAATGCATCCTTGTTGAATAAAAGTTTTGATTTCTTTAAAAAAATCAAACTTTTGAACAGTATTATATAAGGAGGACACTTATTATACACTTAATTATCAATCTTTGTTTCTTAAATTTCTCAGGAGGAATAATAATAAGCACACATTAATCATTTGCTATAAACGTAATGTGAATAGCAGCTCAGATAATTTGATCTTGGGGAAATGTGATGAGAAATGTCCATATTGACTTAATTACAAATGCAGGAGACTTCAGTAAAAATCTTCATTTGTTCTCCATAAAATTTTATTACTAAAGGAGAAACAATTGAGATATTATTTGTCAGTTAGCACCGTATTGCATCTCAGAGCGTATGCTGTACTTCAGCAGCAAGCGTTCACTTTAGGTTTTTGCCAGCTTTTTTTTTTAATCAGGCATTGTCACTAAGCTACACCCGTTACATTACATAAGTCTTTACAAAACACATGCACACAGGCTGCATAGTACAGGCGTGTTGTAATGCCTTTCCAATTAGATAATCGTACAAATATAAGAAAAACAAAGAACTGAGGATGAGTGAAGAAATGTTGGCTTATCTGTTATAAAAGAGACCTTTGTGTTATATGTTTAATTAGAGCTGTTTGCTAAGGTAAGCATCACTATGACTTTTGCTTGTGCTTAGTGTTTGTGATCTGATCAAACTTCTAACACTATGTATTAAAGAGGACCTATAATACCCCTTTTCAAGGATGTAATATAAGTCTCTGGTGTCCCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGCTTGTCAAATTTGCCCCATTTGGGTGTGAGCAAAAACAGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGATCCCGGCCCCCTTTCTAGAAGAGGGCGGAGCTTTAACAGCTCGTGCTTCGGTTGCTCAACAACAACAAAGCTGGAAAATCTCATGCAGACAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGATGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327891 True 2151 lncRNA 0.37 2 519465 614366

Neighbor

gene id symbol gene type direction distance location
CI01000075_00490048_00493037 NA coding downstream 26088 490048 ~ 493377 (-)
CI01000075_00459964_00473668 TWS1A, TWSG1A, TWSG1 coding downstream 44529 459723 ~ 474936 (-)
CI01000075_00448756_00452145 RNF126 coding downstream 67320 447768 ~ 452145 (-)
CI01000075_00385897_00442260 HCN2 coding downstream 77205 384154 ~ 442260 (-)
CI01000075_00336241_00341860 SPINC, SPINB coding downstream 177605 336241 ~ 341860 (-)
CI01000075_00636212_00641437 MTCL1 coding upstream 21618 635984 ~ 641437 (-)
CI01000075_00649702_00654404 NA coding upstream 35054 646532 ~ 654604 (-)
CI01000075_00686719_00747700 PIEZO2 coding upstream 70765 685131 ~ 747700 (-)
CI01000075_00749894_00757773 NA coding upstream 135476 749842 ~ 758555 (-)
CI01000075_00885681_00895778 RANBP3B coding upstream 271061 883956 ~ 895778 (-)
G289099 NA non-coding downstream 117524 399845 ~ 401941 (-)
CI01000075_00307523_00328194 NA non-coding downstream 194097 307523 ~ 331562 (-)
G289076 NA non-coding downstream 246335 271394 ~ 273130 (-)
G289060 NA non-coding downstream 263137 252885 ~ 256328 (-)
G289101 NA non-coding upstream 41493 655859 ~ 660945 (-)
G289148 NA non-coding upstream 50580 664946 ~ 665273 (-)
G289155 NA non-coding upstream 60923 675289 ~ 677231 (-)
G289161 NA non-coding upstream 78150 692516 ~ 692808 (-)
CI01000075_00275752_00278496 NA other downstream 240925 275238 ~ 278542 (-)
G289036 NA other downstream 404860 108703 ~ 114605 (-)
CI01000075_00022145_00044289 NA other downstream 463701 20947 ~ 44289 (-)
G289167 NA other upstream 155728 770094 ~ 788399 (-)
G289427 NA other upstream 877957 1492323 ~ 1515938 (-)

Expression


Co-expression Network