CI01000075_00459964_00473668 (TWS1A, TWSG1A, TWSG1)


Basic Information

Item Value
gene id CI01000075_00459964_00473668
gene name TWS1A, TWSG1A, TWSG1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 459723 ~ 474936 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000075_00459964_00473668.mRNA
AGAGTTCACTGGGCGGCTTTTGTGAGACAGAAGGCGTCTTCCTCTAGGGGGCGCTTAGAGGCTCAAAAAGCAGATTTTCCCATCGAGCTGCATTCGGTTATCACGACGTTTTTTACTTATTGGAGACATCTGAATGCTAACTGGTATATCCGTTTGTTTCAAAGGATTTGTAGTTGATCTGCATACAGGTGACTGTTATTGGTCGACACGATCAGCGCTTTGAAAAGTAACAGGTATCACGTGACTTCCTGATTCTGCAGCTAAAATTCACAATTGAATACTAACACTGAGAAACTTCAATAGAGGTTTAATTGAAAATACATACTGAAGAGTTAAAACAAAATTTATTGTGTTTTTAGACTAAGAAAAAACAAGATCCGGGCCGTTAAGCCACGCCCCTTCAGGACTGGTATGTTGTGCTAATTGCCCTTCTCCTCACTTATTCCATTTCTATGTATCAAAGCCGCTCATGTTTCTATTCAGAGTAAAAGGAGACAAGACAAGAGATCCGTATGAGAGAAAGTCAAAATCCAAAGGAAAGTGTTGAGAAAGCTTTAAAGTCATACAGTAAGTATGCATGCTTTATTTGCCAAATACATGTAAAGATGTGACGTATGCCAAATCTGTGACGTGATAATCCATAGTGTTTTTGCGTCATGTTTGCAGTAATAGAGAAACAGCAGCGCTTTTGGACGTCAGTGTGTTTTTATGCCTATATATTATTAAGTAAACAAGTATCTGTGGCGTTTATGCAAAGTTTTCTTTGTTTTTAAGTATTTCACATTGAGAAAGAAAGTCAAACAATGCCAGCAAAAAGTTTCGCAGTGTTCTTCTGCATTCCAAATCTGTACTTAATTTGCTTGAATGTGAATCATATTTTCCAAGTTAAAAAAAAATACAACTACGAACAAGCTGTTGTTTTCTGCACATACAACAACAAGTGCCTTTTATAAGATAAGCTATAGTTTTGGAGATGTAGCATGGTGTATGATAATACTACTAACATAGTATGTATGGCATCATGGTATATATATAGGTATCATGGTGTGTGTGTGTGTGTGTATATATATATATATATACACACACACACACACACACACACACCTATATATATACCATGATACCATACATACTATATATACTATACTATATATATATATATATATATATACATAGGCTCATATATATACTTTTCTTTCTTTTTCCCCCCTCTCTCTCTGATATTATTTGGTCTCTGTTGGTTTCAGGTGTGTGGGGTTTTGGTCAGGATGCGGCCGGCTCTGTTCCTCTGTCCCGTCCTGATCTCTCTGTTATTTCTTCTGTCTGGACTGACTATCATCAATGGCTGTAACAAAGCTCTGTGTGCCAGTGATGTCAGCAAATGTCTTCTACAGGGTCTTTGTCAGTGCCGGCCATCAGAGGGGAACTGTTCGTGCTGTAAAGAGTGCATGCTGTGTTTGAGCTCTCTCTGGGAGGAGTGCTGCGACTGTGTAGGAATGTGTAACCCAAGGAATTACAACGACAGTCCTGCCACCTCCAAGAGCACCGTAGAAGAGCTGTACCGACCAATCCCGTCGCTCTTCCGTGCTCTGACCGAAGGCGACGCCCCCATAAACATGATGGTCGTGTCGTTTCCCGTTGCTGAGGAACTCTCCCACCACGAGAACCTCGTGTCTTTCCTGGAGACACTCGACAGCCAGAGTCACAACATCTCGTTGCCCAGCAGCAGCGTCCATGATGATGCCTTGTGTACGGTGGTCTACTTTGATGAGTGCGTGTCCATTCGTCAGTGTAAGCAGTACTGCGAGTCGATGGGCGGATCAAAGTACCGCTGGTTTCATAACGCCTGCTGTGAGTGCATCGGGCCTGAATGTCTGGACTACGGCAGTAAAGCCGTCAAATGCATGAACTGCCTCATCTGAGAACTCAACAAAGACTCACTCTACACTTTAACTCGTGTTTTATTGTGTAAAACACTTCTGGCCTTTTCTGTTCTTGTTTACAGATTGTGTTTCTTAATCTTGTCTTTTGGAAAATAAGGTCAAAGGGTTTTTCTTATGTTATCAATATTGTTTGTGAATTATTACAGCAGCATGTTGGGGTCGTTTCTCATTCAAATCATAATTCTCATTTCATATTCATGTTTCTGGTTTGACTATTAAA

Function

symbol description
twsg1a Acts upstream of or within blood vessel development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human TWSG1 (twisted gastrulation BMP signaling modulator 1).
twsg1 Enables transforming growth factor beta binding activity. Involved in several processes, including negative regulation of CD4-positive, alpha-beta T cell proliferation; positive regulation of pathway-restricted SMAD protein phosphorylation; and transforming growth factor beta receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

NR:

description
twisted gastrulation precursor

GO:

id name namespace
GO:0001568 blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000075_00459964_00473668.mRNA True 2163 mRNA 0.41 4 459723 474936

Neighbor

gene id symbol gene type direction distance location
CI01000075_00448756_00452145 RNF126 coding downstream 7578 447768 ~ 452145 (-)
CI01000075_00385897_00442260 HCN2 coding downstream 17463 384154 ~ 442260 (-)
CI01000075_00336241_00341860 SPINC, SPINB coding downstream 117863 336241 ~ 341860 (-)
CI01000075_00307523_00328194 NA coding downstream 128161 307523 ~ 331562 (-)
CI01000075_00305485_00307473 NA coding downstream 151383 305294 ~ 308340 (-)
CI01000075_00490048_00493037 NA coding upstream 15112 490048 ~ 493377 (-)
CI01000075_00537393_00544463 NDUFV2 coding upstream 62398 537334 ~ 544463 (-)
CI01000075_00582299_00626751 MTCL1 coding upstream 107124 582060 ~ 627854 (-)
CI01000075_00636212_00641437 MTCL1 coding upstream 161048 635984 ~ 641437 (-)
CI01000075_00649702_00654404 NA coding upstream 174484 646532 ~ 654604 (-)
G289099 NA non-coding downstream 57782 399845 ~ 401941 (-)
G289076 NA non-coding downstream 186593 271394 ~ 273130 (-)
G289060 NA non-coding downstream 203395 252885 ~ 256328 (-)
G289102 NA non-coding upstream 44529 519465 ~ 614366 (-)
G289090 NA non-coding upstream 73417 548353 ~ 566986 (-)
G289101 NA non-coding upstream 180923 655859 ~ 660945 (-)
G289148 NA non-coding upstream 190010 664946 ~ 665273 (-)
CI01000075_00275752_00278496 NA other downstream 181183 275238 ~ 278542 (-)
G289036 NA other downstream 345118 108703 ~ 114605 (-)
CI01000075_00022145_00044289 NA other downstream 403959 20947 ~ 44289 (-)
G289167 NA other upstream 295158 770094 ~ 788399 (-)
G289427 NA other upstream 1017387 1492323 ~ 1515938 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location