RNA id: CI01000075_00459964_00473668.mRNA


Basic Information

Item Value
RNA id CI01000075_00459964_00473668.mRNA
length 2163
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000075_00459964_00473668
representative True

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 459723 ~ 474936 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGTTCACTGGGCGGCTTTTGTGAGACAGAAGGCGTCTTCCTCTAGGGGGCGCTTAGAGGCTCAAAAAGCAGATTTTCCCATCGAGCTGCATTCGGTTATCACGACGTTTTTTACTTATTGGAGACATCTGAATGCTAACTGGTATATCCGTTTGTTTCAAAGGATTTGTAGTTGATCTGCATACAGGTGACTGTTATTGGTCGACACGATCAGCGCTTTGAAAAGTAACAGGTATCACGTGACTTCCTGATTCTGCAGCTAAAATTCACAATTGAATACTAACACTGAGAAACTTCAATAGAGGTTTAATTGAAAATACATACTGAAGAGTTAAAACAAAATTTATTGTGTTTTTAGACTAAGAAAAAACAAGATCCGGGCCGTTAAGCCACGCCCCTTCAGGACTGGTATGTTGTGCTAATTGCCCTTCTCCTCACTTATTCCATTTCTATGTATCAAAGCCGCTCATGTTTCTATTCAGAGTAAAAGGAGACAAGACAAGAGATCCGTATGAGAGAAAGTCAAAATCCAAAGGAAAGTGTTGAGAAAGCTTTAAAGTCATACAGTAAGTATGCATGCTTTATTTGCCAAATACATGTAAAGATGTGACGTATGCCAAATCTGTGACGTGATAATCCATAGTGTTTTTGCGTCATGTTTGCAGTAATAGAGAAACAGCAGCGCTTTTGGACGTCAGTGTGTTTTTATGCCTATATATTATTAAGTAAACAAGTATCTGTGGCGTTTATGCAAAGTTTTCTTTGTTTTTAAGTATTTCACATTGAGAAAGAAAGTCAAACAATGCCAGCAAAAAGTTTCGCAGTGTTCTTCTGCATTCCAAATCTGTACTTAATTTGCTTGAATGTGAATCATATTTTCCAAGTTAAAAAAAAATACAACTACGAACAAGCTGTTGTTTTCTGCACATACAACAACAAGTGCCTTTTATAAGATAAGCTATAGTTTTGGAGATGTAGCATGGTGTATGATAATACTACTAACATAGTATGTATGGCATCATGGTATATATATAGGTATCATGGTGTGTGTGTGTGTGTGTATATATATATATATATACACACACACACACACACACACACACCTATATATATACCATGATACCATACATACTATATATACTATACTATATATATATATATATATATATACATAGGCTCATATATATACTTTTCTTTCTTTTTCCCCCCTCTCTCTCTGATATTATTTGGTCTCTGTTGGTTTCAGGTGTGTGGGGTTTTGGTCAGGATGCGGCCGGCTCTGTTCCTCTGTCCCGTCCTGATCTCTCTGTTATTTCTTCTGTCTGGACTGACTATCATCAATGGCTGTAACAAAGCTCTGTGTGCCAGTGATGTCAGCAAATGTCTTCTACAGGGTCTTTGTCAGTGCCGGCCATCAGAGGGGAACTGTTCGTGCTGTAAAGAGTGCATGCTGTGTTTGAGCTCTCTCTGGGAGGAGTGCTGCGACTGTGTAGGAATGTGTAACCCAAGGAATTACAACGACAGTCCTGCCACCTCCAAGAGCACCGTAGAAGAGCTGTACCGACCAATCCCGTCGCTCTTCCGTGCTCTGACCGAAGGCGACGCCCCCATAAACATGATGGTCGTGTCGTTTCCCGTTGCTGAGGAACTCTCCCACCACGAGAACCTCGTGTCTTTCCTGGAGACACTCGACAGCCAGAGTCACAACATCTCGTTGCCCAGCAGCAGCGTCCATGATGATGCCTTGTGTACGGTGGTCTACTTTGATGAGTGCGTGTCCATTCGTCAGTGTAAGCAGTACTGCGAGTCGATGGGCGGATCAAAGTACCGCTGGTTTCATAACGCCTGCTGTGAGTGCATCGGGCCTGAATGTCTGGACTACGGCAGTAAAGCCGTCAAATGCATGAACTGCCTCATCTGAGAACTCAACAAAGACTCACTCTACACTTTAACTCGTGTTTTATTGTGTAAAACACTTCTGGCCTTTTCTGTTCTTGTTTACAGATTGTGTTTCTTAATCTTGTCTTTTGGAAAATAAGGTCAAAGGGTTTTTCTTATGTTATCAATATTGTTTGTGAATTATTACAGCAGCATGTTGGGGTCGTTTCTCATTCAAATCATAATTCTCATTTCATATTCATGTTTCTGGTTTGACTATTAAA

Function

GO:

id name namespace
GO:0001568 blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327917 lncRNA downstream 41042 418595 ~ 418681 (-) True G289128
TU327888 lncRNA downstream 57782 399845 ~ 401941 (-) True G289099
TU327839 lncRNA downstream 134355 325081 ~ 325368 (-) True G289058
TU327858 lncRNA downstream 186593 271394 ~ 273130 (-) False G289076
TU327891 lncRNA upstream 44529 519465 ~ 614366 (-) True G289102
TU327876 lncRNA upstream 73417 548353 ~ 566986 (-) True G289090
TU327874 lncRNA upstream 171596 646532 ~ 651915 (-) True CI01000075_00649702_00654404
TU327890 lncRNA upstream 180923 655859 ~ 660945 (-) True G289101
TU327939 lncRNA upstream 190010 664946 ~ 665273 (-) True G289148
CI01000075_00448756_00452145.mRNA mRNA downstream 7578 447768 ~ 452145 (-) True CI01000075_00448756_00452145
CI01000075_00385897_00442260.mRNA mRNA downstream 17463 384154 ~ 442260 (-) False CI01000075_00385897_00442260
CI01000075_00336241_00341860.mRNA mRNA downstream 117863 336241 ~ 341860 (-) True CI01000075_00336241_00341860
CI01000075_00307523_00328194.mRNA mRNA downstream 128161 307523 ~ 331562 (-) False CI01000075_00307523_00328194
CI01000075_00305485_00307473.mRNA mRNA downstream 151383 305294 ~ 308340 (-) True CI01000075_00305485_00307473
CI01000075_00490048_00493037.mRNA mRNA upstream 15112 490048 ~ 493377 (-) True CI01000075_00490048_00493037
CI01000075_00537393_00544463.mRNA mRNA upstream 62398 537334 ~ 544463 (-) True CI01000075_00537393_00544463
CI01000075_00582299_00626751.mRNA mRNA upstream 107124 582060 ~ 627854 (-) True CI01000075_00582299_00626751
CI01000075_00636212_00641437.mRNA mRNA upstream 161048 635984 ~ 641437 (-) True CI01000075_00636212_00641437
CI01000075_00649702_00654404.mRNA mRNA upstream 174484 649420 ~ 654604 (-) False CI01000075_00649702_00654404
TU327838 other downstream 131406 324523 ~ 328317 (-) False CI01000075_00307523_00328194
TU327902 other downstream 136730 320510 ~ 321275 (-) True G289113
TU327862 other downstream 181183 276353 ~ 278540 (-) True CI01000075_00275752_00278496
TU327813 other downstream 345118 108703 ~ 114605 (-) True G289036
TU327767 other downstream 403959 54580 ~ 55764 (-) True G289004
TU327958 other upstream 295158 770094 ~ 788399 (-) True G289167
TU328267 other upstream 1017387 1492323 ~ 1515938 (-) True G289427

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031638 False 5454 mRNA 0.37 4 NC_007113.7 54804385 ~ 54834764 (+)