RNA id: CI01000075_00336241_00341860.mRNA


Basic Information

Item Value
RNA id CI01000075_00336241_00341860.mRNA
length 502
RNA type mRNA
GC content 0.55
exon number 3
gene id CI01000075_00336241_00341860
representative True

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 336241 ~ 341860 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCCAAGAAAAGGGGCAGGAAGCGCAGCAGCGGCGAGCTGAGCGACAGTCTCACCCCAGATCCCAACAACCTGCTGGGCCGACGGATCCAACACAGCTGGAGGGAGAAGGGTGCGCTGACCAAGTGGAAAGGCACCGTGCTGGACCGCCTCAGCGTCAACTCCTCCCTATTCATGGTCAAGTACGACGGTTTCGATTGCGTCTATGGCATCGAGCTCTTTAAAGATGAGAGGGTCTCTAACCTGCAAGTTCTCACAGAGAAAGTGGTGAACAACAAGATCAAGGTTCCTCATGACGCAGAGGAGCTGGTGGGAAAAGCCGTGGAGCATCTGTTTGAGAAGGAGGACGGTGAGAAGAACGAGTGGAGGGGGATGGTCCTGTCCCGAGCGCCCATCATGACCAACTGGTACTACATCACATACGAGAAAGACCCTGTGCTCTACATGTACCAGCTCTGGGACGACTACAAAGACGGAGACCTCCGGATTTTACCTGAAGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327839 lncRNA downstream 10873 325081 ~ 325368 (-) True G289058
TU327858 lncRNA downstream 63111 271394 ~ 273130 (-) False G289076
TU327859 lncRNA downstream 63111 271394 ~ 273130 (-) True G289076
TU327841 lncRNA downstream 79913 252885 ~ 256328 (-) False G289060
TU327842 lncRNA downstream 79913 254136 ~ 256328 (-) True G289060
TU327888 lncRNA upstream 57985 399845 ~ 401941 (-) True G289099
TU327917 lncRNA upstream 75627 418595 ~ 418681 (-) True G289128
TU327891 lncRNA upstream 177605 519465 ~ 614366 (-) True G289102
TU327876 lncRNA upstream 206493 548353 ~ 566986 (-) True G289090
TU327874 lncRNA upstream 304672 646532 ~ 651915 (-) True CI01000075_00649702_00654404
CI01000075_00307523_00328194.mRNA mRNA downstream 4679 307523 ~ 331562 (-) False CI01000075_00307523_00328194
CI01000075_00305485_00307473.mRNA mRNA downstream 27901 305294 ~ 308340 (-) True CI01000075_00305485_00307473
CI01000075_00281734_00287747.mRNA mRNA downstream 48469 281545 ~ 287772 (-) True CI01000075_00281734_00287747
CI01000075_00275752_00278496.mRNA mRNA downstream 57699 275238 ~ 278542 (-) False CI01000075_00275752_00278496
CI01000075_00267234_00274802.mRNA mRNA downstream 61439 267116 ~ 274802 (-) True CI01000075_00267234_00274802
CI01000075_00385897_00442260.mRNA mRNA upstream 42294 384154 ~ 442260 (-) False CI01000075_00385897_00442260
CI01000075_00448756_00452145.mRNA mRNA upstream 105908 447768 ~ 452145 (-) True CI01000075_00448756_00452145
CI01000075_00459964_00473668.mRNA mRNA upstream 117863 459723 ~ 474936 (-) True CI01000075_00459964_00473668
CI01000075_00490048_00493037.mRNA mRNA upstream 148188 490048 ~ 493377 (-) True CI01000075_00490048_00493037
CI01000075_00537393_00544463.mRNA mRNA upstream 195474 537334 ~ 544463 (-) True CI01000075_00537393_00544463
TU327838 other downstream 7924 324523 ~ 328317 (-) False CI01000075_00307523_00328194
TU327902 other downstream 13248 320510 ~ 321275 (-) True G289113
TU327862 other downstream 57701 276353 ~ 278540 (-) True CI01000075_00275752_00278496
TU327813 other downstream 221636 108703 ~ 114605 (-) True G289036
TU327766 other downstream 280477 33101 ~ 55764 (-) False G289004
TU327958 other upstream 428234 770094 ~ 788399 (-) True G289167
TU328267 other upstream 1150463 1492323 ~ 1515938 (-) True G289427

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031641 False 663 mRNA 0.46 4 NC_007113.7 55199721 ~ 55215510 (+)
bowfin (Amia calva) AMCG00005899 True 5805 mRNA 0.43 5 CM030142.1 11906566 ~ 11918065 (-)