RNA id: CI01000075_00537393_00544463.mRNA


Basic Information

Item Value
RNA id CI01000075_00537393_00544463.mRNA
length 689
RNA type mRNA
GC content 0.50
exon number 6
gene id CI01000075_00537393_00544463
representative True

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 537334 ~ 544463 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAGAGACACACCGGACAACAATCCAGAGACTCCATTCGAGTTCTCCCCAGAAAACCTGAAGAGAGTTGAGGCCATCATTAATAATTACCCAGAGGGACACAAGGCGGCCGCCACCATTCCTGTGCTGGATTTGGCTCAGAGGCAACATGGATGGCTTCCTATTTCAGCAATGAACAAGGTGGCAGAGATCCTGGGCATTGCTCCAATGAGGGTTTATGAAGTAGCAACTTTCTACACCATGTTTCTCCGTCAGCCAGTGGGAAAGTACCACATCCAGATCTGCACCACTACGCCCTGCATGCTCTGTGACTCGGACAGCATCCTGGAGGCCATCCAGAACAAACTGGGTATCAAAGTCGGGGAGACTACAGCAGATAAATTATTCACGCTAACAGAAGTCGAATGTCTCGGAGCTTGTGTGAACGCACCAATGGTCCAGATCAACGATAACTATTATGAGGATCTTAAACCATCAGACATGGAGCAGATCCTTGATGAGCTGAAGGCAGGGAGAGTTCCTCCTCCTGGGCCCAGGGGTGGGCGTTTTTCATGTGAACCCGCTGGAGGTTTAACCTCCCTGACAGAACCTCCTCCTGGACCGGGCTTTGGTGTGAGACCTGACCTGTAACTGGACCTCCATGGTCTTGAGCCCTTGTAAACGTCAGAGATGTTGTGTATGTAAATAAA

Function

GO:

id name namespace
GO:0045272 plasma membrane respiratory chain complex I cellular_component

KEGG:

id description
K03943 NDUFV2; NADH dehydrogenase (ubiquinone) flavoprotein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327917 lncRNA downstream 118653 418595 ~ 418681 (-) True G289128
TU327888 lncRNA downstream 135393 399845 ~ 401941 (-) True G289099
TU327839 lncRNA downstream 211966 325081 ~ 325368 (-) True G289058
TU327858 lncRNA downstream 264204 271394 ~ 273130 (-) False G289076
TU327876 lncRNA upstream 3890 548353 ~ 566986 (-) True G289090
TU327874 lncRNA upstream 102069 646532 ~ 651915 (-) True CI01000075_00649702_00654404
TU327890 lncRNA upstream 111396 655859 ~ 660945 (-) True G289101
TU327939 lncRNA upstream 120483 664946 ~ 665273 (-) True G289148
TU327946 lncRNA upstream 130826 675289 ~ 677231 (-) True G289155
CI01000075_00490048_00493037.mRNA mRNA downstream 43957 490048 ~ 493377 (-) True CI01000075_00490048_00493037
CI01000075_00459964_00473668.mRNA mRNA downstream 62398 459723 ~ 474936 (-) True CI01000075_00459964_00473668
CI01000075_00448756_00452145.mRNA mRNA downstream 85189 447768 ~ 452145 (-) True CI01000075_00448756_00452145
CI01000075_00385897_00442260.mRNA mRNA downstream 95074 384154 ~ 442260 (-) False CI01000075_00385897_00442260
CI01000075_00336241_00341860.mRNA mRNA downstream 195474 336241 ~ 341860 (-) True CI01000075_00336241_00341860
CI01000075_00582299_00626751.mRNA mRNA upstream 37597 582060 ~ 627854 (-) True CI01000075_00582299_00626751
CI01000075_00636212_00641437.mRNA mRNA upstream 91521 635984 ~ 641437 (-) True CI01000075_00636212_00641437
CI01000075_00649702_00654404.mRNA mRNA upstream 104957 649420 ~ 654604 (-) False CI01000075_00649702_00654404
CI01000075_00686719_00747700.mRNA mRNA upstream 140668 685131 ~ 747700 (-) True CI01000075_00686719_00747700
CI01000075_00749894_00757773.mRNA mRNA upstream 205379 749842 ~ 758555 (-) True CI01000075_00749894_00757773
TU327838 other downstream 209017 324523 ~ 328317 (-) False CI01000075_00307523_00328194
TU327902 other downstream 214341 320510 ~ 321275 (-) True G289113
TU327862 other downstream 258794 276353 ~ 278540 (-) True CI01000075_00275752_00278496
TU327813 other downstream 422729 108703 ~ 114605 (-) True G289036
TU327767 other downstream 481570 54580 ~ 55764 (-) True G289004
TU327958 other upstream 225631 770094 ~ 788399 (-) True G289167
TU328267 other upstream 947860 1492323 ~ 1515938 (-) True G289427

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031633 True 911 mRNA 0.51 8 NC_007113.7 54641644 ~ 54690184 (+)