RNA id: TU327946


Basic Information

Item Value
RNA id TU327946
length 583
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G289155
representative True

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 675289 ~ 677231 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAACAAGTATGCCTTGAACACACTAACTGTGAACCCAATGTACATTTAACTTTTATTTTCCCTGTCACAGATCAATGCAGAGTTCAATCACATCACAATCAGAAGCCTCAATCAAGAATTCTTCTCAGCGCTTTATCAACTTGCAGCTTGATTTTTGGAAATTTGTGCAACAAAGAAAGTGGCAGTTGAAAAGAGAGTTTCTTGCGCAAATTAAATCTATGCACCGTCATCACTGCTAAGTGCACAGTTCTTCATGGCCTTCCTCTTATTCTTGGAGAAGAAACCTCTGATTTTTTTTAAACAGTGCTGACAGGACTGTGATTGTGACACACCCTTCTTGGGGATTCTGACCGTGATAACAGAGGACAGCCAGGATTCTTCCTCCACAAGAACTACATTTGGAGTCTTCATGCACAGCATTATTCTAGACTGAGCCATTGTCATGGATGAACTTGAAAACCTTCCAGGTGCCATGTGACTAATTTTAGGGCTGATATGTGCCAAATTTGGAGTTTTTCTTTCCCTTGGACACAATTCTCTGAAACCAAAACTATATTCACTTAAAACCCTTCTGTTGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327939 lncRNA downstream 10016 664946 ~ 665273 (-) True G289148
TU327890 lncRNA downstream 14344 655859 ~ 660945 (-) True G289101
TU327874 lncRNA downstream 23374 646532 ~ 651915 (-) True CI01000075_00649702_00654404
TU327891 lncRNA downstream 60923 519465 ~ 614366 (-) True G289102
TU327876 lncRNA downstream 108303 548353 ~ 566986 (-) True G289090
TU327952 lncRNA upstream 15285 692516 ~ 692808 (-) True G289161
TU327970 lncRNA upstream 123645 800876 ~ 804399 (-) True G289175
TU328011 lncRNA upstream 195188 872419 ~ 872683 (-) True G289209
TU327976 lncRNA upstream 206725 883956 ~ 886562 (-) True CI01000075_00885681_00895778
TU328018 lncRNA upstream 236455 913686 ~ 914104 (-) True G289216
CI01000075_00649702_00654404.mRNA mRNA downstream 20685 649420 ~ 654604 (-) False CI01000075_00649702_00654404
CI01000075_00636212_00641437.mRNA mRNA downstream 33852 635984 ~ 641437 (-) True CI01000075_00636212_00641437
CI01000075_00582299_00626751.mRNA mRNA downstream 47435 582060 ~ 627854 (-) True CI01000075_00582299_00626751
CI01000075_00537393_00544463.mRNA mRNA downstream 130826 537334 ~ 544463 (-) True CI01000075_00537393_00544463
CI01000075_00490048_00493037.mRNA mRNA downstream 181912 490048 ~ 493377 (-) True CI01000075_00490048_00493037
CI01000075_00686719_00747700.mRNA mRNA upstream 7900 685131 ~ 747700 (-) True CI01000075_00686719_00747700
CI01000075_00749894_00757773.mRNA mRNA upstream 72611 749842 ~ 758555 (-) True CI01000075_00749894_00757773
CI01000075_00885681_00895778.mRNA mRNA upstream 208196 885427 ~ 895778 (-) False CI01000075_00885681_00895778
CI01000075_00952466_00992777.mRNA mRNA upstream 274908 952139 ~ 992777 (-) True CI01000075_00952466_00992777
CI01000075_01161238_01161465.mRNA mRNA upstream 483961 1161192 ~ 1161465 (-) True CI01000075_01161238_01161465
TU327838 other downstream 346972 324523 ~ 328317 (-) False CI01000075_00307523_00328194
TU327902 other downstream 352296 320510 ~ 321275 (-) True G289113
TU327862 other downstream 396749 276353 ~ 278540 (-) True CI01000075_00275752_00278496
TU327813 other downstream 560684 108703 ~ 114605 (-) True G289036
TU327767 other downstream 619525 54580 ~ 55764 (-) True G289004
TU327958 other upstream 92863 770094 ~ 788399 (-) True G289167
TU328267 other upstream 815092 1492323 ~ 1515938 (-) True G289427

Expression Profile