RNA id: TCONS_00031641


Basic Information

Item Value
RNA id TCONS_00031641
length 663
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_015966
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55199721 ~ 55225028 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCCAAGAAAAGGGCCAGGAAGCGCAGCAGCGGCGAACTAAGCGACAGTCTCACTCCAGATCCTAACAACCTGCTGGGCCGCCGGATCCAACACAGCTGGAGGGAGAAGGGGGCGCTGACCAAGTGGAAGGGCACCGTTCTGGACCGGCTCAGCGTCAACTCTTCGCTCTTCATGGTCAAATATGACGGATTCGACTGCGTTTACGGCATCGAGCTCTTTAAGGACGAGAGGGTCTCAAACCTGCAGGTTCTCAATGAGAAAGTGGTAAACAATAAGATCAAGGTTCCTCATGACGCAGAGGAGCTGGTGGGCAAAGCGGTGGAGCATCTGTTTGAGAAGGAGGACGGAGAGAAGAACGAGTGGCGAGGGATGGTCCTGTCCCGAGCGCCCATCATGACCAACTGGTACTACATCACATACGAGAAAGACCCCGTCCTGTACATGTACCAGCTCTGGGACGACTACAAAGACGGAGACCTGCGGATCTTACCTGAAGCTGGTTTTGAATATATATGTTTTGAAAGTGGTGacattgtatgtatgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtatagacataatgcatgtgtgtgtgtatagtttaGTATATACATGTGCATAA

Function

GO:

id name namespace
GO:0007276 gamete generation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-524 Predicted to act upstream of or within gamete generation. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000016143

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031630 lncRNA upstream 752008 54430632 ~ 54447713 (+) True XLOC_015960
TCONS_00033703 lncRNA upstream 771783 54425088 ~ 54427938 (+) True XLOC_015959
TCONS_00031626 lncRNA upstream 885512 54305610 ~ 54314209 (+) True XLOC_015956
TCONS_00033323 lncRNA upstream 1051443 54085893 ~ 54148278 (+) False XLOC_015955
TCONS_00033702 lncRNA upstream 1155930 54042778 ~ 54043791 (+) True XLOC_015954
TCONS_00033324 lncRNA downstream 7177 55222687 ~ 55222898 (+) True XLOC_015966
TCONS_00033719 lncRNA downstream 52510 55268020 ~ 55269290 (+) True XLOC_015968
TCONS_00033325 lncRNA downstream 387618 55603128 ~ 55603565 (+) True XLOC_015971
TCONS_00033720 lncRNA downstream 562312 55777822 ~ 55780037 (+) True XLOC_015973
TCONS_00033721 lncRNA downstream 567027 55782537 ~ 55784445 (+) True XLOC_015974
TCONS_00031640 mRNA upstream 219571 54844755 ~ 54980150 (+) True XLOC_015965
TCONS_00031638 mRNA upstream 364957 54804385 ~ 54834764 (+) False XLOC_015964
TCONS_00031639 mRNA upstream 366679 54827391 ~ 54833042 (+) True XLOC_015964
TCONS_00031637 mRNA upstream 366680 54798689 ~ 54833041 (+) False XLOC_015964
TCONS_00031636 mRNA upstream 412973 54755172 ~ 54786748 (+) True XLOC_015963
TCONS_00031642 mRNA downstream 34328 55249838 ~ 55266971 (+) True XLOC_015967
TCONS_00031643 mRNA downstream 150217 55365727 ~ 55390332 (+) True XLOC_015969
TCONS_00031644 mRNA downstream 214478 55429988 ~ 55492315 (+) True XLOC_015970
TCONS_00031645 mRNA downstream 449585 55665095 ~ 55670817 (+) False XLOC_015972
TCONS_00031646 mRNA downstream 449813 55665323 ~ 55673225 (+) True XLOC_015972
TCONS_00031635 other upstream 412981 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031622 other upstream 1513533 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031613 other upstream 3060025 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031589 other upstream 4307777 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031582 other upstream 4609273 50590332 ~ 50590448 (+) True XLOC_015919
TCONS_00031662 other downstream 924462 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031668 other downstream 1247701 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031669 other downstream 1272158 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031670 other downstream 1282384 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031672 other downstream 1623171 56838681 ~ 56838799 (+) True XLOC_015991

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000075_00336241_00341860.mRNA True 502 mRNA 0.55 3 CI01000075 336241 ~ 341860 (-)
eurasian perch (Perca fluviatilis) TU159467 True 1938 lncRNA 0.44 4 NC_053122.1 26960400 ~ 26963752 (-)
bowfin (Amia calva) AMCG00005899 True 5805 mRNA 0.43 5 CM030142.1 11906566 ~ 11918065 (-)