XLOC_015959


Basic Information

Item Value
gene id XLOC_015959
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 54425088 ~ 54427938 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033703
agttgaagtcagacaGAAGtcaattattggcccccctttgaatttcttttttatttttaaatatttcccaacttatgtttagcagagcaaggagaaagtcttatttgtattattttggctagaataaaagcagtttgatttttttttaaaggttgtttaaaggtcaaaagtattaccccctttcagctatataatttttctattgtctacagagcaaaccactgttatacaataacttgcctaattaccctaacctgcctagttaacctaattaacctagttaagcctttaaatgtcactttaagctgtatagaagtgtcttgaaaaatatctagtaaaatattatttgttgtcatcatggcaaagataaaataaatcagttattaaaaatgagttattaaaactaatatgtttagaaatgtgttgaaaaaattgtagaaaaaacagtgtaggctcagtaattttacttttatagtgatgaatacgttattttcattgcatttagagggaaataactgaacataaacataagaggctgAGAAAAAGTAACTCATTTTGAGCAAACATTTCAgatggcttttagaggtttttgcatctgaattcttcatatattttacagcatttttcccTGACATTTAAGCACCCATTCCATTTTCTTAACAAAACAATcatcattaatcattaattaataaattaattagccacagccatatcaccctgtcGCCCAAgaccactgaagctaagcagggctgagcatggtcagtacctgaatgggagaccacatgggaaaacttggTTACTgttggaaatggtgttagtgaggccagcagggggcgctcaacctgtggtctgtgagtTCTAATGCCTcattatagtgaaggggacactatactgtcagtaagcttcgtctttcggatgagatgttaaaccatgTTCCCGactcactgtggtcattaaaaatcccatggcacttcttgtaaagagtagtaCTGAATTGAATGAATTGTAAAGTCCCGAAACAGATAGGCGTAACGGATCGGGGTGTCTCAGATAAAAGGGAAGGCCGGGGGTTGTGTCGTGGACGAAAGTAAAGAGAgataaaatgaggtgccggatcagatttcagacgTGCTAGATCCTGATGTGGcttgttctggcacaaattaagccctgggcaTAACCCCAtcgtcctggccaaatttccccCATCTGTCCTTACCTATCATGGCCTCTctatcatccccatccaccgaattggctctatcactgtctctactccacctatagctggtgtggtgagcgcactggagCCATTGTCCtctggctgccgttgcatcatcccaagtggatgctgcacactgatggtggcgTGAAGAGACCCccaccctcatgattgtgaagtccATACATATAAATGCACACGTTACATTAATTAATAGCAGTACAACAGATATTACCAGTGTTTCATTTTTTCTTATGTACTAATTATTTACCGTAGGTGCAAATGTGATCAATTTTTCCATCATTATACCATCacaatttttactttatttaataatacatttaattagagaattatttgttgctctaaaatctaaatatactttattattattatatagcatTTTTCCATAACATTTATGCCCCCAAATTGTCTTAATGTGAACtcctattttaatatttaatttgtttcagTACATCAGATATcactaaatacacacacaaaaaaaaagatttctgcaaaattgttgcagcttatttaggctgaatttaaacaaattcaatttactaatgttcaactttgtttgtttaaattcagcccaaataaatagtttttaaccatttaacttaaaaaaaaatgtaaatccaagaaataatctttgaatcattttttttcagtgtagtttttttttttcattttgtgggTGATCAATTTTCATGAAAATAAAGTTATCCTCATTATTTTTACACATACCCCCCACAGTTTTGTGCTGACGCATGAGCTATAAATATTCTAGACATGTTTTCTGATGTTCACCTCACGTCGGCTGACAGAAGGATGGTGTACGTGTGCAGTGGAAGTGTGTTTACGTTGTTTATCTTGCGATATTCTCATCAGAAATCAGTGTTACTAAACCTCTGCTTATTTTTTGAGGGACTAATGTCGGAAATGCTTCTTTATAATTATTACTCTATTTAACTGTTTTAGTTTTCAGACTGAGTGTCTTTTATAACCAAGTATATGTTAAAAGTGTTGGACAAAGTGTACTAACCTCATTTGTGCTTGTGCCatattgtaattttatatattGGAACGATCCTATTCACCATGTGCTTTTCACTTCATTTTTCTGCAGAATTTAGCATTTATTATAGATGTTGAATACTTTCTGAACCCTGagatttgtttgctttgttttgtttcttattttattcACAGCAAATCCTCCTTGGTTCATTTGTTGTGgtttaaacaaaattttttgcctttttttgttCCTGAttcatatttgtaatttaatagtttgaagctaaatattttcatttttcccCCCAGACTAAATGACTGTAATTTCAGAAACATCTTGAGAAAGGTAAACCCAACACACTTTTAACACTCAGTAGAGTTTTTCTGAGTAGCATTTAACATGTTGCCTTAGCCTTGGTTTATTCTCTCAGAATTTACTACATTACAATCCTCATTACACTGCAAAACAGAAGAGCTCTTTGTACGAATAATACATTGATAGTAGTTCTTTGGCATGATTAAGGcagtttttgtgtgtatttataactTGTGGCATTCTTAAACTAATGAGGTGCAAATAAAGATCTATATTTATTACACAGA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0022610 biological adhesion biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0043010 camera-type eye development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048856 anatomical structure development biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0001885 endothelial cell development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0007155 cell adhesion biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033703 True 2851 lncRNA 0.34 1 54425088 54427938

Neighbor

gene id symbol gene type direction distance location
XLOC_015958 rab12 coding upstream 1452 54387710 ~ 54423636 (+)
XLOC_015957 LO018508.1 coding upstream 71463 54327160 ~ 54353625 (+)
XLOC_015956 CU179656.2 coding upstream 110879 54305610 ~ 54314209 (+)
XLOC_015955 NA coding upstream 154722 54085893 ~ 54270366 (+)
XLOC_015954 NA coding upstream 381297 54042778 ~ 54043791 (+)
XLOC_015960 CABZ01050280.1 coding downstream 2694 54430632 ~ 54447713 (+)
XLOC_015961 mtcl1 coding downstream 54665 54482603 ~ 54509065 (+)
XLOC_015962 ndufv2 coding downstream 213706 54641644 ~ 54690184 (+)
XLOC_015963 ankrd12 coding downstream 268104 54696042 ~ 54786748 (+)
XLOC_015964 twsg1a coding downstream 370751 54798689 ~ 54834764 (+)
XLOC_015951 CU861888.1 non-coding upstream 738900 53686071 ~ 53686188 (+)
XLOC_015949 NA non-coding upstream 844316 53579249 ~ 53580772 (+)
XLOC_015968 NA non-coding downstream 840082 55268020 ~ 55269290 (+)
XLOC_015971 NA non-coding downstream 1175190 55603128 ~ 55603565 (+)
XLOC_015973 NA non-coding downstream 1349884 55777822 ~ 55780037 (+)
XLOC_015974 NA non-coding downstream 1354599 55782537 ~ 55784445 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G190181 NA non-coding NW_025048446.1 JAEQBD010000791.1 372953 ~ 375640 (+)