XLOC_015971


Basic Information

Item Value
gene id XLOC_015971
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55603128 ~ 55603565 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033325
GTTCTCCTGAAACACAACAGACTACATCGCTATCAAGGAGCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTCAAGACTCTGATGTCCGAAAACAGTGGCCTGCATGTTTCTGGGAGTTCAGGTTTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATACCTTCTTTTTTTTGGATGAATACGCTATCaagttttatcaatcatgtggtgggccctccaggaattgagtttgacacccctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033325 True 264 lncRNA 0.45 3 55603128 55603565

Neighbor

gene id symbol gene type direction distance location
XLOC_015970 ap1m1 coding upstream 110813 55429988 ~ 55492315 (+)
XLOC_015969 LPL coding upstream 212796 55365727 ~ 55390332 (+)
XLOC_015968 NA coding upstream 333838 55268020 ~ 55269290 (+)
XLOC_015967 cib3 coding upstream 336157 55249838 ~ 55266971 (+)
XLOC_015966 zmp:0000000521 coding upstream 378100 55199721 ~ 55225028 (+)
XLOC_015972 klf2b coding downstream 61530 55665095 ~ 55673225 (+)
XLOC_015973 NA coding downstream 174257 55777822 ~ 55780037 (+)
XLOC_015974 NA coding downstream 178972 55782537 ~ 55784445 (+)
XLOC_015975 atcayb coding downstream 311134 55914699 ~ 55970970 (+)
XLOC_015976 nmrk2 coding downstream 378735 55982300 ~ 55990329 (+)
XLOC_015960 CABZ01050280.1 non-coding upstream 1155415 54430632 ~ 54447713 (+)
XLOC_015959 NA non-coding upstream 1175190 54425088 ~ 54427938 (+)
XLOC_015956 CU179656.2 non-coding upstream 1288919 54305610 ~ 54314209 (+)
XLOC_015955 NA non-coding upstream 1332762 54085893 ~ 54270366 (+)
XLOC_015978 NA non-coding downstream 521438 56125003 ~ 56130443 (+)
XLOC_015981 NA non-coding downstream 568528 56172093 ~ 56172528 (+)
XLOC_015983 NA non-coding downstream 720769 56324334 ~ 56335388 (+)

Expression


Co-expression Network