RNA id: TCONS_00033325


Basic Information

Item Value
RNA id TCONS_00033325
length 264
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_015971
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55603128 ~ 55603565 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCTCCTGAAACACAACAGACTACATCGCTATCAAGGAGCATCCTGGCAGCAGCCTTGTTTGTTCGCAGACTGCTTCTGCACTTTCAAGACTCTGATGTCCGAAAACAGTGGCCTGCATGTTTCTGGGAGTTCAGGTTTATGCTGAGTTTTACAGGATTACTCAAACCAACCTCAAAGATACCTTCTTTTTTTTGGATGAATACGCTATCaagttttatcaatcatgtggtgggccctccaggaattgagtttgacacccctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033719 lncRNA upstream 333838 55268020 ~ 55269290 (+) True XLOC_015968
TCONS_00033715 lncRNA upstream 378100 55215217 ~ 55225028 (+) False XLOC_015966
TCONS_00033720 lncRNA downstream 174257 55777822 ~ 55780037 (+) True XLOC_015973
TCONS_00033721 lncRNA downstream 178972 55782537 ~ 55784445 (+) True XLOC_015974
TCONS_00031653 lncRNA downstream 379375 55982940 ~ 55990298 (+) False XLOC_015976
TCONS_00031655 lncRNA downstream 379375 55982940 ~ 55990329 (+) False XLOC_015976
TCONS_00031654 lncRNA downstream 379384 55982949 ~ 55984016 (+) False XLOC_015976
TCONS_00031644 mRNA upstream 110813 55429988 ~ 55492315 (+) True XLOC_015970
TCONS_00031643 mRNA upstream 212796 55365727 ~ 55390332 (+) True XLOC_015969
TCONS_00031642 mRNA upstream 336157 55249838 ~ 55266971 (+) True XLOC_015967
TCONS_00031641 mRNA upstream 387618 55199721 ~ 55215510 (+) False XLOC_015966
TCONS_00031640 mRNA upstream 622978 54844755 ~ 54980150 (+) True XLOC_015965
TCONS_00031645 mRNA downstream 61530 55665095 ~ 55670817 (+) False XLOC_015972
TCONS_00031646 mRNA downstream 61758 55665323 ~ 55673225 (+) True XLOC_015972
TCONS_00031647 mRNA downstream 311134 55914699 ~ 55970970 (+) False XLOC_015975
TCONS_00031650 mRNA downstream 313346 55916911 ~ 55948210 (+) False XLOC_015975
TCONS_00031649 mRNA downstream 313346 55916911 ~ 55948210 (+) False XLOC_015975
TCONS_00031635 other upstream 816388 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031622 other upstream 1916940 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031613 other upstream 3463432 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031589 other upstream 4711184 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031582 other upstream 5012680 50590332 ~ 50590448 (+) True XLOC_015919
TCONS_00031662 other downstream 536407 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031668 other downstream 859646 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031669 other downstream 884103 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031670 other downstream 894329 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031672 other downstream 1235116 56838681 ~ 56838799 (+) True XLOC_015991