XLOC_015965 (rnf126)


Basic Information

Item Value
gene id XLOC_015965
gene name rnf126
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 54844755 ~ 54980150 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031640
TCGACTCCTTATGTGTCCACTAGATGCCGCTATAGAATTTTTTTTCGCTTATATTGTGCAACAACTGTGTTATAATAATCAGTTAATATAAACAGAAATGCTGGTAAATACATAATGTCGTTAGAATAATGTTACTGAAAATAATTCAAGCGCTATCAATAtcaaaacaagtaaacaaaattaaagaaagtatttaaaatgtaaactgaaGAAGAAAATAGTAGggaattttaataatgtaattacattGGATATGTAAATACATACGGTGTGTGTATAGAGCTTTGTGTATTTTCCCAAACGCGTTCCGTTGTGCGCACTCACTTACAGCGCAGCGGCACTTGTTTTTGCTCCGTCCCGGCTTCCATACTTCGCCTCGTTCTCGCTTTCAGTCGGTCGTGCAGTGAAGATGGCGGAAGCAACCCCGCGGCCCTGCCGGTTCTTCTGTCACCGGTGCTCGGAAGAAATCAGCCCTCGGCTCCCGGATTACATCTGTCCGCGGTGTGAGTCTGGCTTCATCGAGGAGTTACCTGAAGAGGGCAGTTCAGAGAATGGGTCCACATCTACAGCCTCTAATGATCAGAATCGTCCGTCGTTTGAGAATGTGGACCAGCACTTGTTTACATTCCCGCATGGATATGGTCAGTTTGCTTTGGGGATCTTCGACGAGGGCTTCGACTTCAGGGGCGGTTTGCCAGGAGAAGATAACCGTGATGCAGAAAACCGCAGAGAACGGGAGATGGCGTCACGGCAGCGGTACGGGGCCAGACAGCCACGAGGACGACACGTGCCTCGGAGACAAGGACAGCGGCATGAGGGAGTACCTACTTTAGAAGGAATCATTCAGCAGTTAGTTAATGGAATTATTGCTCCGACAGCAATGCCAAACATGGCAATGGGGCCCTGGGGAATGCTGCACTCAAACCCAATGGACTATGCATGGGGGGCCAACGGATTAGATGCCATCATAACACAGttattaaatcagtttgAAAATACGGGTCCTCCTCCAGCAGACAAAGACAAGATTAAAAGCCTCCCTACAGTCCAGATAAAACAGGAGCATGTGGGTGCAGGTCTGGAGTGTCCAGTGTGTAAAGAAGACTACAGTGCAGGAGAAAACGTCAGACAACTTCCTTGCAATCATCTCTTCCATAACGACTGTATAGTTCCCTGGCTCGAGCAGCACGACACGTGTCCGGTGTGCAGGAAGAGTTTGAGCGGTCAGAACACAGCCACGGATCCTCCAGGCCTGTCAGGGATGAATTTCTCTCCATcgtcctcttcctcttcctcctccagcTCTCCAAGCAACGAGAACGCCACTAATAACTCATAAGAGCTCAGTCCACGTCCAGAACACATCAttgtcttcatcatcatcttcatcatcatcagctcAGCCCACTGCGCCCACACCAGAACCCTGAAAACACGGCGCTGGACTGATGGAGAACTGAGCCATCACACACATTATCACACAAACCTGACCAGCTCTGAGAGcaagccaaacacacacacacatacaaacacacacacacttacatatacaaacacacacacacacactctcctctAACACTATACACCCCGCCTCCTTTCTTTATTTTAAAGCGCTAAACTTCAGAGCCATGAGTTCTCAAGGTTTCAGCGCACACCTGTCCACATCACATGCTTTTAATCAGCAGAAAGGAGGAGGAAAATGctgagaggaagagagagatgAAGAACAAGAGGAGATGCAGACACACTCACAGCTGAACTGCGTTTTTAAAAGCAGACTGCGTGTCTCTGGAGAGCGACACGCTCATGAAGAACTTTTTGTTTTAAGCATTTGGAATTTATTTCACTGATGAAAGTGGCTGATATGTAGACGTGCTTATAGCTGATTTCACAAAACCCCACACATTTGAACCCAAAAATCTCAAGatggttttaataattattttcataaCCATAATGCAACATAATCTGGCTCATTACCGTAATGCAACAAAATCTGGCTCATTACTGTAGTGCAAAAAAATCTGACTCGTTACCGTAATTTAACAAAATTTGATTTAATACCGTAACGCAACAAAATCTGGTTCATTACCATAATGCAAAAAATTTGATTCATTACCCTAATGCAGCAAAATCTGATTCATTACCGTAATGCAACAAAATCTGACTCTCTTCCATGATGTAACAATATCTGACTCATTATCATAATGCAAAAAAATTGGACTGGTTACCCTAATGCAAAAAAATCTGACTCATTACTGTAATACAACAAAATTGATTTATTACCGTAATGGAACAAAATCTGACTCATTACCGTAATGCAAAAAAATGACTGATTACCGTAACACAACAAAAAACTGACTCATTACAGTAATGTAACAAAATTTGATTCAATACCATAACGCAACAAAATCAGACTCATTACTGTAATGCTATAAAATCTGACTCATTACCGTAGTGCAACAAAATCTGACTCATTACTGTAATGCAACAAAAATCTGACTCATTACCGTAATGCAACAAAATTCTGACTCATTACTGTAACgcaaaaaaattctgacttttccgtgatgcaacaaaaatattactCATTACAGTAATGCAACAAAAATCTGACTCATTAACGTAATGCAAAAAAATCTGACTTATTACTGTAATGCAACAAAATCTAACTCATTACCGTAGTGCAACAAAATCTGACTCATTACTgtaatgcaacaaaaatattactCATTACCGTAATGCAACAAAATCTGACTCATTACTGTAAcgcaaaaaaattctaaaaagacTTTACcgtgatgcaacaaaaatattactCATTACAGTAATGCAACAAAAATCTGACTCATTAACGTAATGCAAAAAAATCTGACTTATTACTGTAATGCAACAAAATCTGACTCATTGTCGTAATGCAACAAAAATCTGACTTATTATCGTAACGCaacaaaaatctgaattattaccGTAATGCAACAAAAATCTTACTCATTACCCTAATGCAACAAAAATATGACTCATTACAGGCAACAAAAGTTTGACTCATTACCGTAATGCAACAAAATCTGACTTATTACTGTAATGCAACAAAATCTGACTCATTGTCGTAATGCAACAAAAATCTGACTTATTACCGTAATGCAACAAAAATCTCACTCATTACCGTAACGCAACAAAAATCGGACTCGTTTCTGTTATGCAGaataatctgattcaatgaccaACAGAAAGATAGAATGTTGCATGGAAGAAtctataaatttgttataaattataGATTGTGGCATGTATTACACTTagtttaaagggaaaaaaaataagcCTTAGGTCGTTATATATTTTGGCTACTTTTTCAATGGTCATCCATCTTTAAgatgtattataatttttttatgacacCTGCAAACAAAGATAACCTTTATTAATCAATAGATAGGTAAATAAGAAAAATACACAAGTCAAGGCAAATAATGTACATTACTGCATTAAAAAGCATATACTTGCAGcacatttacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgagaccTTTTCTTAACtggtataccttgaacacggttattgtcccatgtctAGCAGCGACTCTACGTGACTATTGCAGATCCacatattgcaatattgatgctaaaacgatctattgtgcagccctatactgCACGTTTCATTTTGTtcaccaggttttttttttctggcatcaTTCTAACCTCTAACATTCATACAATCTTTCCATAGTAAAAAACATTCTTTACAGGGATTAAAgactccaggggcctcatgcaCAACAACTTGcattgaattaatactaaaacattgcgtacagacaaagctgtaaatgtgcgtacgcggtaaaaaaattcagatgtatgaaacactgcgtccgcggaatcccacgcatattctctttgtacatacGAATTAACGTAAAACTGAGCGcacacaaaacccctccctgtctCCTCCCCTgtataaatatgctaatgactctatttGGCAAAA

Function

symbol description
rnf126 Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Orthologous to human RNF126 (ring finger protein 126).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-292 Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Orthologous to human RNF126 (ring finger protein 126).

Ensembl:

ensembl_id ENSDARG00000104076

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031640 True 4071 mRNA 0.39 9 54844755 54980150

Neighbor

gene id symbol gene type direction distance location
XLOC_015964 twsg1a coding upstream 9991 54798689 ~ 54834764 (+)
XLOC_015963 ankrd12 coding upstream 58007 54696042 ~ 54786748 (+)
XLOC_015962 ndufv2 coding upstream 154571 54641644 ~ 54690184 (+)
XLOC_015961 mtcl1 coding upstream 335690 54482603 ~ 54509065 (+)
XLOC_015960 CABZ01050280.1 coding upstream 397042 54430632 ~ 54447713 (+)
XLOC_015966 zmp:0000000521 coding downstream 219571 55199721 ~ 55225028 (+)
XLOC_015967 cib3 coding downstream 269688 55249838 ~ 55266971 (+)
XLOC_015968 NA coding downstream 287870 55268020 ~ 55269290 (+)
XLOC_015969 LPL coding downstream 385577 55365727 ~ 55390332 (+)
XLOC_015970 ap1m1 coding downstream 449838 55429988 ~ 55492315 (+)
XLOC_015959 NA non-coding upstream 416817 54425088 ~ 54427938 (+)
XLOC_015956 CU179656.2 non-coding upstream 530546 54305610 ~ 54314209 (+)
XLOC_015955 NA non-coding upstream 574389 54085893 ~ 54270366 (+)
XLOC_015954 NA non-coding upstream 800964 54042778 ~ 54043791 (+)
XLOC_015971 NA non-coding downstream 622978 55603128 ~ 55603565 (+)
XLOC_015973 NA non-coding downstream 797672 55777822 ~ 55780037 (+)
XLOC_015974 NA non-coding downstream 802387 55782537 ~ 55784445 (+)
XLOC_015978 NA non-coding downstream 1144853 56125003 ~ 56130443 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000075_00448756_00452145 RNF126 coding CI01000075 null 447768 ~ 452145 (-)
bowfin (Amia calva) AMCG00005903 rnf126,LOC102780338,LOC107569633 coding CM030142.1 CM030142.1 11996824 ~ 12003499 (+)