RNA id: TCONS_00031640


Basic Information

Item Value
RNA id TCONS_00031640
length 4071
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_015965
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 54844755 ~ 54980150 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGACTCCTTATGTGTCCACTAGATGCCGCTATAGAATTTTTTTTCGCTTATATTGTGCAACAACTGTGTTATAATAATCAGTTAATATAAACAGAAATGCTGGTAAATACATAATGTCGTTAGAATAATGTTACTGAAAATAATTCAAGCGCTATCAATAtcaaaacaagtaaacaaaattaaagaaagtatttaaaatgtaaactgaaGAAGAAAATAGTAGggaattttaataatgtaattacattGGATATGTAAATACATACGGTGTGTGTATAGAGCTTTGTGTATTTTCCCAAACGCGTTCCGTTGTGCGCACTCACTTACAGCGCAGCGGCACTTGTTTTTGCTCCGTCCCGGCTTCCATACTTCGCCTCGTTCTCGCTTTCAGTCGGTCGTGCAGTGAAGATGGCGGAAGCAACCCCGCGGCCCTGCCGGTTCTTCTGTCACCGGTGCTCGGAAGAAATCAGCCCTCGGCTCCCGGATTACATCTGTCCGCGGTGTGAGTCTGGCTTCATCGAGGAGTTACCTGAAGAGGGCAGTTCAGAGAATGGGTCCACATCTACAGCCTCTAATGATCAGAATCGTCCGTCGTTTGAGAATGTGGACCAGCACTTGTTTACATTCCCGCATGGATATGGTCAGTTTGCTTTGGGGATCTTCGACGAGGGCTTCGACTTCAGGGGCGGTTTGCCAGGAGAAGATAACCGTGATGCAGAAAACCGCAGAGAACGGGAGATGGCGTCACGGCAGCGGTACGGGGCCAGACAGCCACGAGGACGACACGTGCCTCGGAGACAAGGACAGCGGCATGAGGGAGTACCTACTTTAGAAGGAATCATTCAGCAGTTAGTTAATGGAATTATTGCTCCGACAGCAATGCCAAACATGGCAATGGGGCCCTGGGGAATGCTGCACTCAAACCCAATGGACTATGCATGGGGGGCCAACGGATTAGATGCCATCATAACACAGttattaaatcagtttgAAAATACGGGTCCTCCTCCAGCAGACAAAGACAAGATTAAAAGCCTCCCTACAGTCCAGATAAAACAGGAGCATGTGGGTGCAGGTCTGGAGTGTCCAGTGTGTAAAGAAGACTACAGTGCAGGAGAAAACGTCAGACAACTTCCTTGCAATCATCTCTTCCATAACGACTGTATAGTTCCCTGGCTCGAGCAGCACGACACGTGTCCGGTGTGCAGGAAGAGTTTGAGCGGTCAGAACACAGCCACGGATCCTCCAGGCCTGTCAGGGATGAATTTCTCTCCATcgtcctcttcctcttcctcctccagcTCTCCAAGCAACGAGAACGCCACTAATAACTCATAAGAGCTCAGTCCACGTCCAGAACACATCAttgtcttcatcatcatcttcatcatcatcagctcAGCCCACTGCGCCCACACCAGAACCCTGAAAACACGGCGCTGGACTGATGGAGAACTGAGCCATCACACACATTATCACACAAACCTGACCAGCTCTGAGAGcaagccaaacacacacacacatacaaacacacacacacttacatatacaaacacacacacacacactctcctctAACACTATACACCCCGCCTCCTTTCTTTATTTTAAAGCGCTAAACTTCAGAGCCATGAGTTCTCAAGGTTTCAGCGCACACCTGTCCACATCACATGCTTTTAATCAGCAGAAAGGAGGAGGAAAATGctgagaggaagagagagatgAAGAACAAGAGGAGATGCAGACACACTCACAGCTGAACTGCGTTTTTAAAAGCAGACTGCGTGTCTCTGGAGAGCGACACGCTCATGAAGAACTTTTTGTTTTAAGCATTTGGAATTTATTTCACTGATGAAAGTGGCTGATATGTAGACGTGCTTATAGCTGATTTCACAAAACCCCACACATTTGAACCCAAAAATCTCAAGatggttttaataattattttcataaCCATAATGCAACATAATCTGGCTCATTACCGTAATGCAACAAAATCTGGCTCATTACTGTAGTGCAAAAAAATCTGACTCGTTACCGTAATTTAACAAAATTTGATTTAATACCGTAACGCAACAAAATCTGGTTCATTACCATAATGCAAAAAATTTGATTCATTACCCTAATGCAGCAAAATCTGATTCATTACCGTAATGCAACAAAATCTGACTCTCTTCCATGATGTAACAATATCTGACTCATTATCATAATGCAAAAAAATTGGACTGGTTACCCTAATGCAAAAAAATCTGACTCATTACTGTAATACAACAAAATTGATTTATTACCGTAATGGAACAAAATCTGACTCATTACCGTAATGCAAAAAAATGACTGATTACCGTAACACAACAAAAAACTGACTCATTACAGTAATGTAACAAAATTTGATTCAATACCATAACGCAACAAAATCAGACTCATTACTGTAATGCTATAAAATCTGACTCATTACCGTAGTGCAACAAAATCTGACTCATTACTGTAATGCAACAAAAATCTGACTCATTACCGTAATGCAACAAAATTCTGACTCATTACTGTAACgcaaaaaaattctgacttttccgtgatgcaacaaaaatattactCATTACAGTAATGCAACAAAAATCTGACTCATTAACGTAATGCAAAAAAATCTGACTTATTACTGTAATGCAACAAAATCTAACTCATTACCGTAGTGCAACAAAATCTGACTCATTACTgtaatgcaacaaaaatattactCATTACCGTAATGCAACAAAATCTGACTCATTACTGTAAcgcaaaaaaattctaaaaagacTTTACcgtgatgcaacaaaaatattactCATTACAGTAATGCAACAAAAATCTGACTCATTAACGTAATGCAAAAAAATCTGACTTATTACTGTAATGCAACAAAATCTGACTCATTGTCGTAATGCAACAAAAATCTGACTTATTATCGTAACGCaacaaaaatctgaattattaccGTAATGCAACAAAAATCTTACTCATTACCCTAATGCAACAAAAATATGACTCATTACAGGCAACAAAAGTTTGACTCATTACCGTAATGCAACAAAATCTGACTTATTACTGTAATGCAACAAAATCTGACTCATTGTCGTAATGCAACAAAAATCTGACTTATTACCGTAATGCAACAAAAATCTCACTCATTACCGTAACGCAACAAAAATCGGACTCGTTTCTGTTATGCAGaataatctgattcaatgaccaACAGAAAGATAGAATGTTGCATGGAAGAAtctataaatttgttataaattataGATTGTGGCATGTATTACACTTagtttaaagggaaaaaaaataagcCTTAGGTCGTTATATATTTTGGCTACTTTTTCAATGGTCATCCATCTTTAAgatgtattataatttttttatgacacCTGCAAACAAAGATAACCTTTATTAATCAATAGATAGGTAAATAAGAAAAATACACAAGTCAAGGCAAATAATGTACATTACTGCATTAAAAAGCATATACTTGCAGcacatttacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgagaccTTTTCTTAACtggtataccttgaacacggttattgtcccatgtctAGCAGCGACTCTACGTGACTATTGCAGATCCacatattgcaatattgatgctaaaacgatctattgtgcagccctatactgCACGTTTCATTTTGTtcaccaggttttttttttctggcatcaTTCTAACCTCTAACATTCATACAATCTTTCCATAGTAAAAAACATTCTTTACAGGGATTAAAgactccaggggcctcatgcaCAACAACTTGcattgaattaatactaaaacattgcgtacagacaaagctgtaaatgtgcgtacgcggtaaaaaaattcagatgtatgaaacactgcgtccgcggaatcccacgcatattctctttgtacatacGAATTAACGTAAAACTGAGCGcacacaaaacccctccctgtctCCTCCCCTgtataaatatgctaatgactctatttGGCAAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-292 Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Orthologous to human RNF126 (ring finger protein 126).

Ensembl:

ensembl_id ENSDART00000170428

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031630 lncRNA upstream 397042 54430632 ~ 54447713 (+) True XLOC_015960
TCONS_00033703 lncRNA upstream 416817 54425088 ~ 54427938 (+) True XLOC_015959
TCONS_00031626 lncRNA upstream 530546 54305610 ~ 54314209 (+) True XLOC_015956
TCONS_00033323 lncRNA upstream 696477 54085893 ~ 54148278 (+) False XLOC_015955
TCONS_00033702 lncRNA upstream 800964 54042778 ~ 54043791 (+) True XLOC_015954
TCONS_00033705 lncRNA downstream 234992 55215142 ~ 55225028 (+) False XLOC_015966
TCONS_00033704 lncRNA downstream 234992 55215142 ~ 55225028 (+) False XLOC_015966
TCONS_00033707 lncRNA downstream 235043 55215193 ~ 55225028 (+) False XLOC_015966
TCONS_00033708 lncRNA downstream 235043 55215193 ~ 55225028 (+) False XLOC_015966
TCONS_00033706 lncRNA downstream 235043 55215193 ~ 55225028 (+) False XLOC_015966
TCONS_00031638 mRNA upstream 9991 54804385 ~ 54834764 (+) False XLOC_015964
TCONS_00031639 mRNA upstream 11713 54827391 ~ 54833042 (+) True XLOC_015964
TCONS_00031637 mRNA upstream 11714 54798689 ~ 54833041 (+) False XLOC_015964
TCONS_00031636 mRNA upstream 58007 54755172 ~ 54786748 (+) True XLOC_015963
TCONS_00031634 mRNA upstream 70002 54696042 ~ 54774753 (+) False XLOC_015963
TCONS_00031641 mRNA downstream 219571 55199721 ~ 55215510 (+) False XLOC_015966
TCONS_00031642 mRNA downstream 269688 55249838 ~ 55266971 (+) True XLOC_015967
TCONS_00031643 mRNA downstream 385577 55365727 ~ 55390332 (+) True XLOC_015969
TCONS_00031644 mRNA downstream 449838 55429988 ~ 55492315 (+) True XLOC_015970
TCONS_00031645 mRNA downstream 684945 55665095 ~ 55670817 (+) False XLOC_015972
TCONS_00031635 other upstream 58015 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031622 other upstream 1158567 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031613 other upstream 2705059 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031589 other upstream 3952811 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031582 other upstream 4254307 50590332 ~ 50590448 (+) True XLOC_015919
TCONS_00031662 other downstream 1159822 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031668 other downstream 1483061 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031669 other downstream 1507518 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031670 other downstream 1517744 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031672 other downstream 1858531 56838681 ~ 56838799 (+) True XLOC_015991

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000075_00448756_00452145.mRNA True 1786 mRNA 0.38 7 CI01000075 447768 ~ 452145 (-)
bowfin (Amia calva) AMCG00005903 True 1070 mRNA 0.57 9 CM030142.1 11996824 ~ 12003499 (+)