RNA id: TCONS_00031644


Basic Information

Item Value
RNA id TCONS_00031644
length 4889
RNA type mRNA
GC content 0.36
exon number 12
gene id XLOC_015970
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55429988 ~ 55492315 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCCGCCCGGTTCCTCAAAATCTCCCATCCGCAGTTTGATGATGTTGGGTTTTCTATGAGCGTGTAAACCCGATGACAGCTCTTTATTAAACTAACAAATGCCTCAGAACTGAGTGGAGCCGCGTAGATCAACGAAAGTGCGGTCGAAAAGGGTGCAAACATGTCGGCCAGCGCTGTTTATGTGTTAGACCTGAAGGGGAAGgtccTGATCTGCCGTAATTACCGCGGGGATGTGGACATGTCCGAGATTGAGCATTTTATGACTCTGCTGATGGACAAAGAGGAGGAGGGCACACTCTCACCCATCCTGGCTCACGGTGGAGTGCGCTTCATGTGGATTAAACACAACAACCTCTACCTTGTTGCAACATCCAAAAAGAACGCTTGTGTCTCCCTGGTTTTTTCTTTCCTGTACAAAATTGTTCAGGTTTTCTCTGAGTACTTTAAGGAGCTGGAGGAGGAGAGTATCAGAGATAACTTTGTCATTATCTATGAGCTGCTGGATGAACTCATGGATTTCGGATATCCTCAAACTACTGACAGCAAGATCCTCCAGGAATACATCACGCAGGAAGGTCATAAGTTGGACACGGGAGCTCCTCGACCCCCTGCAACCGTCACTAACGCCGTGTCCTGGAGGTCAGAGGGCATCAAGTACAGGAAGAACGAGGTTTTCCTGGACGTCATCGAGTCCGTTAACCTCCTGGTCAGTGCGAATGGGAATGTCCTTCGCAGTGAGATTGTCGGCTCCATTAAGATGAGAGTGTTTCTCTCAGGGATGCCAGAGCTGCGTTTGGGTTTGAATGACAAGGTTTTGTTCGAGAACACTGGCCGTGGTAAGAGTAAGTCGGTGGAGTTAGAGGATGTGAAGTTTCATCAGTGTGTGCGTCTATCTCGATTTGAGAACGATCGCACCATCTCCTTTATTCCTCCCGATGGAGAGTTTGAGCTGATGTCCTACCGCCTCAACACACATGTAAAGCCACTGATCTGGATCGAGTCTGTGATCGAGAAACATTCCCACAGCAGAATCGAGTACATGATAAAAGCCAAGTCTCAGTTTAAGCGACGCTCTACTGCCAACAATGTGGAGATTCATATTCCAGTCCCGACAGACGCCGACTCGCCAAAGTTTAAGACCACAGTGGGCAGCGTAAAGTGGGTGCCTGAAAACAGCGAGATTGTTTGGTCCATCAAGTCTTTCCCTGGAGGTAAGGAGTATCTGATGAGGGCTCATTTCGGCCTGCCCAGCGTCGAGGCGGAGGACAAAGAGGGAAAACCACCAATCAGTGTCAAGTTTGAGATCCCCTATTTCACCACTTCTGGAATTCAGGTGCGTTACTTGAAGATCATTGAGAAGAGTGGATATCAGGCCCTGCCATGGGTTCGGTACATCACCCAGAACGGAGACTATCAGCTGCGGACTCAGTGAGAGGCATCATGGGTCACGTCACACTCATCTGCAGCAGAATACTCGAATACAGGTCATGCTTTGGCTACAGCTCGCATTCATGGATTGAAATTGAATCTTTAGTACAGCGTTGACTAGATTTGGTCCTGATTACGAAGATCCTGAACGTTAGAGGACACAAGTGGATGATGAATCACTAGTCACTAACAACATGTGAATCAGATGACTCGTTTAATTGTTGAATCATTGTTTAATTGTTCTTTCCATGATAATTAATCATTCCTGTTGTAGCCAGGATATATTCAGATTTGTTTCTCAAAAATGCCACTGTTTTTGTCCATAATGAGAATAGAACGAACAGGATTTCTCCTAAATTTGAAAGTTTTGCTCCACAATTTATTCCAAATTTTGAAATTTCAGAAACAATATCTTGTTATTTAgacttttttcttttgtgttactATTTTGCAATTTCAAGTTTATAGACTTTCACTTAATTCTGAGTTACAATTCTGATAGTCTAGACAAGTTATTTGTTTAGTGCTTTACACAATGCAAACTTGAAAGCAGGTAACAACTGAACATTGTCAGGCAGCAGTGAACCAAaaactcaaacacacatacacacacaaaattaaaaataaatagtattaataacaGTTGGATAAAATGTAAtgagatgaaaaaaataaaaataaataacaataataaaataaattatttaaattattaaaaaccttTGTGACTAAACCTGTTTTACTCGGGTAaaggcatatatatataaatattatatgtgtgtgtgtgtgtgtatgaagaaTGTTTAATCCTTTAGTATatagcactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaagacatacacgcatataaaatatgtaattattataaaataaagttaaaatgtcTGAATTTCAAGATACAAACTAAATTCTAAAAAccaatatttacatttcaaatattatattatttaaacattatattattcatatataatgtttatattttgcaaaactgatatatatatatatatacatttttttagatcTGTCAGAATTGTGAGGAAAAATCTAATTCTGTATCtcaattctgacatttttctcttttaaaatgaACCATTTCTTGCAAATTCTGATCAGATTTTTTCCCTTACAATTTCCACTGCTTCTATCACACAATTCAAACcctttttagaaattaaaatggCAATATCCTTATTATATGTTGCAATTCAGAGGCTCTTGATATTAAATCTGACAATTTTAAGTGTAGTTTTGTTTTTGCAGACTTGCGGGCAGGATTGAAAGATACAGACTTGAAATTGTAAGATAAAACATGAGAGAAAAAAATTTTCAAACTCgcaattacttttttttctccatggCATAAACAAGGTTCCCACATTCCCCTCAAATTTAGTAGTGACTTTATAGCAGATTCTGCTTTCCTCATATATCCGGAAGTGATTTCAGGACTGTGATCGACATACTgcagatgtttgtgtgtgagacaGTAAACAGGAATCATTTCTCTCATTAATGTGTCATTAATAGCGCAGCGATGATTCTGCATCACATCTCAAAGGAGTGTGTCACATTTCAGATGTGTTCTTACTGTAAACGCTTCAGGTTATTTTTTCTACAGTTTGTGATTATTTATCGACTGAACGGTCTTAAAGGGGCAGTTTACACAAAAAATGGAAATtccttcatcatttactcagcctccaaacctgtttgagttactTTCCTCTGGTGAACACAAAGGAAGTTAAACTAAAGgattaaacattcttcaaaatatcttattttgtattcTACCCATGCATGTTGGAGaatcttccttctgttgaacacaaaggaagatagaTATACTGAAAAAGGGTGAAAAAAGCAGTcattgactaccatagtattTTTAGCTCTTCATTTTCTCcccaacttttttaaaaacatctcatTTAGTATTATTCTCAAGCTCCAaatatgtttgagtttcttccttctgttgaacacaaaggaagatatactgaagaatgctgtaaatatcagccattgacttccttagtattttCGGCTCTTCTtgttccccaacattcttcaaaatatcttactttGTATTCTACCCAATGCATGTTGGAGaatcttccttctgttgaacacaaagacaGATATGCTGAAGAAGGCTGGAAAAAGCAGTcattgactaccatagtattTTTAGCTCTTCATTTcctccccaacattcttcaaaatatctcattttgtaTTATTCTCAAGCTCCAaatatgtttgagtttcttccttctgtcgaacacaaaggaagatatactgaagaatgctgtaaaTATCAGCCactgacttccttagtatttttacctttttttagttccccaacattcttcaaaatatcttattcttTATTCTACTTGCGTTAGAAACatattgagtttctttcttctgttaaattaaaaaaaatagatagataaactgaagaatgctggaacaaTTAGCTATTAACTAATGAGTATTTTTAGCTCTTTATTtcccccccaacattcttcaaaatatcttattctgTATTCTGCTCAAGCTCCaaacatatttgagtttcttccttttaaacacaaaggaagatatactgaagaatgctggggGGAAAAGCAACCATTGACTATCATAGTATTTTTTTAGCGCTTTATTTTCCCtccccaacatttttcaaaatatcttttgtattCAGCAGAAGAAGGAAATAAAGTTAGAAATTTGAACCACTTGACTTTGAGTAAATGGTAAGGAGATACATTTTTTGGcgcactgtccctttaaggtcACACACAGCCTGTTGTCTGTTGCACTTGtgtttacttttattgtcaaatcCCTTAAAGGTCAAACGAATATCATCTTAGTCCAAACTGAACCGCTTTACACTTGATAGAAGATGCATTTAATGTAGTGTTTTCTGTCAGGGATGTCCAGATATTGTTCACATTCAGTATTTTTGATggtatttctatattttttagttttattttcttgtttattctGCCTGTAGTGTTCACGTGTTTCAGTATTATCTGTTACAATAGGCAAACTTGTGTTTACTTCTCTGCTGACATGCAGAATTACACTCGAAGACTATTTGACACAAATCTGAAATCGACCATGGTGCCATTGTGAAAAtagcaaattaaatataattagttttttctGTAACGTTGATTTGTCTTTAATTTTGCCTTGAAAATGGATGAAATGAGCAGTTTACCATGTTTACTGCGGTACTGAATGTGCTGAAATTTGACAATTGTATTCCTGTAGAAATATTACTGTAATCTCACTGAAATCATTGACTCTGTACACATCGAGCATCATAAAGTACATATTGAGAAAAC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0048565 digestive tract development biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0007420 brain development biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0030136 clathrin-coated vesicle cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0030665 clathrin-coated vesicle membrane cellular_component
GO:0035615 clathrin adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110126-1 Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development and digestive tract development. Predicted to be located in Golgi apparatus and clathrin-coated vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in several structures, including central nervous system; digestive system; eye; gonad; and heart. Orthologous to human AP1M1 (adaptor related protein complex 1 subunit mu 1).

Ensembl:

ensembl_id ENSDART00000166920

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033719 lncRNA upstream 160698 55268020 ~ 55269290 (+) True XLOC_015968
TCONS_00033716 lncRNA upstream 204960 55215259 ~ 55225028 (+) False XLOC_015966
TCONS_00033325 lncRNA downstream 110813 55603128 ~ 55603565 (+) True XLOC_015971
TCONS_00033720 lncRNA downstream 285507 55777822 ~ 55780037 (+) True XLOC_015973
TCONS_00033721 lncRNA downstream 290222 55782537 ~ 55784445 (+) True XLOC_015974
TCONS_00031653 lncRNA downstream 490625 55982940 ~ 55990298 (+) False XLOC_015976
TCONS_00031655 lncRNA downstream 490625 55982940 ~ 55990329 (+) False XLOC_015976
TCONS_00031643 mRNA upstream 39656 55365727 ~ 55390332 (+) True XLOC_015969
TCONS_00031642 mRNA upstream 163017 55249838 ~ 55266971 (+) True XLOC_015967
TCONS_00031641 mRNA upstream 214478 55199721 ~ 55215510 (+) False XLOC_015966
TCONS_00031640 mRNA upstream 449838 54844755 ~ 54980150 (+) True XLOC_015965
TCONS_00031638 mRNA upstream 595224 54804385 ~ 54834764 (+) False XLOC_015964
TCONS_00031645 mRNA downstream 172780 55665095 ~ 55670817 (+) False XLOC_015972
TCONS_00031646 mRNA downstream 173008 55665323 ~ 55673225 (+) True XLOC_015972
TCONS_00031647 mRNA downstream 422384 55914699 ~ 55970970 (+) False XLOC_015975
TCONS_00031650 mRNA downstream 424596 55916911 ~ 55948210 (+) False XLOC_015975
TCONS_00031649 mRNA downstream 424596 55916911 ~ 55948210 (+) False XLOC_015975
TCONS_00031635 other upstream 643248 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031622 other upstream 1743800 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031613 other upstream 3290292 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031589 other upstream 4538044 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031582 other upstream 4839540 50590332 ~ 50590448 (+) True XLOC_015919
TCONS_00031662 other downstream 647657 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031668 other downstream 970896 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031669 other downstream 995353 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031670 other downstream 1005579 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031672 other downstream 1346366 56838681 ~ 56838799 (+) True XLOC_015991

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000075_01033320_01042574.mRNA True 2523 mRNA 0.41 11 CI01000075 1033220 ~ 1043695 (+)
bowfin (Amia calva) AMCG00005980 True 1155 mRNA 0.55 9 CM030142.1 13936793 ~ 13948464 (+)