RNA id: TCONS_00031649


Basic Information

Item Value
RNA id TCONS_00031649
length 963
RNA type mRNA
GC content 0.50
exon number 9
gene id XLOC_015975
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55914699 ~ 55970970 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGAACCACTGAAGCCACTTTACGCATGGAGAACATGGAGGTCAAAGACGAGTGGCAGGACGATGATTTCCCACGACCTCTTCCTGAAGATGGTGATTTAGACGGACTCACTGACAACTGTAAGTTCTCTAGTGCTTCTGATTTGTGTGTTATTAACAAGCTGAGACCAAAGCGCCGCACATTGATCGCTCCCGATATAAACCTGTCGCTGGACAAAAGCGAAGGTTCAGTCCTTTCTGACGACTTTTTGGAAACTCCAGATGATCTGGACATAAACGTTGACGACATCGAGACGCCGGATGACGACTCTCTTGGCTCTGCCAACAACGGCACCGAGCTGGAATGGGAAGATGACACTCCGGTGGCGAGTGCGAAGGGTCCAGGTGGAGATGATGGTGACGGGACAGGGCGTCTGTGGAGAAGCGTGATCATCGGGGATCAGGAACACAGAATAGACATGCAGGTGATCAGACCGTACCTGCGCGTCGTCACACATGGAGGTTATTATGGTGAAGGACTGAACGCCATCATTGTGTTTGCGGCCTGTTACCTGCCTGACAGCGGCTGCGCAGACTACAACTACATCATGGAGAATCTCTTCCTGTATGTGATCAGTAGTTTGGAGGCGCTGGTTGCTGAGGACTATATGATCATCTATCTGAATGGAGCCACGCCGCGCAGGAGAATGCCAGGCATCAGCTGGTTAAAGAGATGCTACCAGATGATCGAAAGACGGTTAAGGAAGAATCTGAAATGTCTGATCATTGCACATCCTACCTGGTTCATCCGCACCGTTCTGGCAATCTCACGGCCATTCGTCAATGTGAAGTTCATGGATAAGATCCGTTATGTGCAGAGTCTGCAGGAGCTGGCTCAGATTGTTCCTATGGAGCATGTGCAGATACccgagtgtgttttgcaATTCGACGAGGAGCAAATCAAAGTGCAGAGAGAAAGGTAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006798 polyphosphate catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004309 exopolyphosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-220 Predicted to enable exopolyphosphatase activity. Predicted to be involved in apoptotic process and polyphosphate catabolic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Cayman type cerebellar ataxia and cerebellar ataxia. Orthologous to human ATCAY (ATCAY kinesin light chain interacting caytaxin).

Ensembl:

ensembl_id ENSDART00000183647

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033721 lncRNA upstream 132466 55782537 ~ 55784445 (+) True XLOC_015974
TCONS_00033720 lncRNA upstream 136874 55777822 ~ 55780037 (+) True XLOC_015973
TCONS_00033325 lncRNA upstream 313346 55603128 ~ 55603565 (+) True XLOC_015971
TCONS_00033719 lncRNA upstream 647621 55268020 ~ 55269290 (+) True XLOC_015968
TCONS_00033324 lncRNA upstream 694013 55222687 ~ 55222898 (+) True XLOC_015966
TCONS_00031653 lncRNA downstream 34730 55982940 ~ 55990298 (+) False XLOC_015976
TCONS_00031655 lncRNA downstream 34730 55982940 ~ 55990329 (+) False XLOC_015976
TCONS_00031654 lncRNA downstream 34739 55982949 ~ 55984016 (+) False XLOC_015976
TCONS_00033722 lncRNA downstream 34739 55982949 ~ 55990329 (+) False XLOC_015976
TCONS_00031656 lncRNA downstream 35775 55983985 ~ 55990329 (+) False XLOC_015976
TCONS_00031646 mRNA upstream 243686 55665323 ~ 55673225 (+) True XLOC_015972
TCONS_00031645 mRNA upstream 246094 55665095 ~ 55670817 (+) False XLOC_015972
TCONS_00031644 mRNA upstream 424596 55429988 ~ 55492315 (+) True XLOC_015970
TCONS_00031643 mRNA upstream 526579 55365727 ~ 55390332 (+) True XLOC_015969
TCONS_00031642 mRNA upstream 649940 55249838 ~ 55266971 (+) True XLOC_015967
TCONS_00031651 mRNA downstream 34090 55982300 ~ 55989688 (+) False XLOC_015976
TCONS_00031652 mRNA downstream 34730 55982940 ~ 55990284 (+) False XLOC_015976
TCONS_00031658 mRNA downstream 36578 55984788 ~ 55989693 (+) True XLOC_015976
TCONS_00031659 mRNA downstream 63806 56012016 ~ 56041890 (+) False XLOC_015977
TCONS_00031660 mRNA downstream 63860 56012070 ~ 56040091 (+) True XLOC_015977
TCONS_00031635 other upstream 1130171 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031622 other upstream 2230723 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031613 other upstream 3777215 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031589 other upstream 5024967 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031582 other upstream 5326463 50590332 ~ 50590448 (+) True XLOC_015919
TCONS_00031662 other downstream 191762 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031668 other downstream 515001 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031669 other downstream 539458 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031670 other downstream 549684 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031672 other downstream 890471 56838681 ~ 56838799 (+) True XLOC_015991