XLOC_015977 (loxl5b)


Basic Information

Item Value
gene id XLOC_015977
gene name loxl5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56012016 ~ 56041890 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031659
TTGACGCACTACAGATTCCCACATCCAGAGGAGCGAATCATacagctttaaaaaatgttttttacaatttcaaacttcattttctttttgtatttactTCAAGGACTGAATAATTTAACCAGCGCGCAAAGCTCCGCGCAATGGAGGAACCGGGTCCGATGGGTGAATAACGGCCAGGTGTTCAGTTTAATGAGCACCGGCTCCGAGTTTCACGCTCCGGTTCCGTCCAGGAGACAGTCCAGGGTGTATCAGAGCAGCAGGACGGATGCTGTTCCCGGCAGAAGCATGCAAATTCGGCTAGAAGCGATGGATAGACCTGCTAACAGCGCGCCGGACAGTGCGCTTTTGGGTCCGGACCGCGCGCAATACATCATGGCGAACAGCCGCGCTCCTGGAGCCAGACAAATGCAGGTCATGCAGAGACACAGAGCTCCTCCAGCAAGCAGAAATAACTCTACGGTCCCTTCGGAATATTCAGGTGGAGGTGGAAGAACTGGGGAAAACACCCGGAGAGGGCAAGCGGTTGCGAATTTCCAACAAATCGCAGCACCGACGGACAATTCAAACACCGTCAATTCAGATAATGGAAATGAAGCGCGAACTCCAAATGTGCCAGCCGAGCAGGGAGCTACATCTGAAACTATGCCTGGAGATGATCCGAGAAACAGGAATACagttttttataacatttatccACCCGGCGGTAGGACGATTATTCCCCGCCGACCGCCGCCTGGCACCGGTTATGGCACCAGATTTTTCCAAAATGGTCTGCCGGATCTTGTGCCAGATCCATACTCCATCCAGGCGGGTTCATACATCCAGCGCGTCCAGATGTACGCGCTCCGGTGCGCGGCGGAGGAGAACTGCCTAGCGCGAACTGCTTACAGACCAACAGTCAGAGATCTGGACTACAGGGTTCTGCTCCGATTCCCGCAGAAGGTGCGAAACATGGGAACGGCGGACTTTCTGCCCGTCAAACCCAGGCATCAGTGGGAGTGGCACAGCTGCCATCAGCATTATCACAGCATGGACGCGTTCAGTCACTATGATCTGCTGGACATCAGCACTGGACGGAAGGTTGCAGAAGGACACAAGGCCAGTTTCTGTCTGGAAGACACAGGCTGTGATCCTGGCTTTCACCGCAGATACGCCTGCACcgcacacacacagggtttgagtccaggctgcCATGACACATACGCTGCCAACATCGACTGTCAGTGGATCGACATCACAGATGTCCCGCCTGGAAACTACTTTCTCAAGGTGACGGTGAATCCGGATTTCCTGGTGGCCGAGTCGGATTTCTCCAATAACGTGGTGCGATGTGAAGTCATTTACACTGGCATTTACATCCAGACCAGAAACTGCATCATAACTGGGAGTTAAAGTCTTCAGACTAACAAGTTGTTCTAAAGACCTATAAAATAGGTTTACTTATAATAATTTGATAGATTTTTTATATGCAATTTTTGGGATAACTTGAACCATTCAATATAGCTGTTGGAATAATATGTAATGACTAAAGTACTGTATATGTGTTTTAAATGGCTTCATGCGAACGTTTGCATTAGACggttatttttgcatatttttttaaatgaagagctttttagtgtttgtatttattacatttgtactattattattattaatgattgcAACGTTTCTTTTAAGCAGAGGGTTGTTTGGTGCTTTATTAGCTGATGGTGAATATTGTGTTTACCACTAGTGTCAGATATAGACACGGCGTTTGGTTCTGCAGCAGTCAGTGGATATCATCTGGAGTATTATACTGACGTTGTGTGTGTTTGCCATGATTATAATGATGCCTCCGTGAATGCTGGAGCTGATGGACGAGGCCAGTTGTGGCTTGAGATGCAATAAACAGAAATGCAGAGAATGTAA
>TCONS_00031660
atgttttttacaatttcaaacttcattttctttttgtatttactTCAAGGACTGAATAATTTAACCAGCGCGCAAAGCTCCGCGCAATGGAGGAACCGGGTCCGATGGGTGAATAACGGCCAGGTGTTCAGTTTAATGAGCACCGGCTCCGAGTTTCACGCTCCGGTTCCGTCCAGGAGACAGTCCAGGGTGTATCAGAGCAGCAGGACGGATGCTGTTCCCGGCAGAAGCATGCAAATTCGGCTAGAAGCGATGGATAGACCTGCTAACAGCGCGCCGGACAGTGCGCTTTTGGGTCCGGACCGCGCGCAATACATCATGGCGAACAGCCGCGCTCCTGGAGCCAGACAAATGCAGGTCATGCAGAGACACAGAGCTCCTCCAGCAAGCAGAAATAACTCTACGGTCCCTTCGGAATATTCAGGTGGAGGTGGAAGAACTGGGGAAAACACCCGGAGAGGGCAAGCGGTTGCGAATTTCCAACAAATCGCAGCACCGACGGACAATTCAAACACCGTCAATTCAGATAATGGAAATGAAGCGCGAACTCCAAATGTGCCAGCCGAGCAGGGAGCTACATCTGAAACTATGCCTGGAGATGATCCGAGAAACAGGAATACagttttttataacatttatccACCCGGCGGTAGGACGATTATTCCCCGCCGACCGCCGCCTGGCACCGGTTATGGCACCAGATTTTTCCAAAATGGTCTGCCGGATCTTGTGCCAGATCCATACTCCATCCAGGCGGGTTCATACATCCAGCGCGTCCAGATGTACGCGCTCCGGTGCGCGGCGGAGGAGAACTGCCTAGCGCGAACTGCTTACAGACCAACAGTCAGAGATCTGGACTACAGGGTTCTGCTCCGATTCCCGCAGAAGGTGCGAAACATGGGAACGGCGGACTTTCTGCCCGTCAAACCCAGGCATCAGTGGGAGTGGCACAGCTGCCATCAGCATTATCACAGCATGGACGCGTTCAGTCACTATGATCTGCTGGACATCAGCACTGGACGGAAGGTTGCAGAAGGACACAAGGCCAGTTTCTGTCTGGAAGACACAGGCTGTGATCCTGGCTTTCACCGCAGATACGCCTGCACcgcacacacacagggtttgagtccaggctgcCATGACACATACGCTGCCAACATCGACTGTCAGTGGATCGACATCACAGATGTCCCGCCTGGAAACTACTTTCTCAAGGTGACGGTGAATCCGGATTTCCTGGTGGCCGAGTCGGATTTCTCCAATAACGTGGTGCGATGTGAAGTCATTTACACTGGCATTTACATCCAGACCAGAAACTGCATCATAACTGGGTGAGGAAATGTGATTTTAATAGTGCTGTCAAAACTTGattaataaaagtttgtatttacataaaatattattgtgtgtatatataaatacaaacatgcatgtatatatttaaaaaaaaatatttgaatttatatataacatatttatgTCAACAatttatatctaaaaataaataagtacgcAAATAGCttagttttgaatattttttgtattttatgtatgattgtgtttatatatacataaaaaacatacacattcattcattttcttgtcggcttagtccctttattaatccggggtcgccacagcagaatgaaccgccaacttatccagcaagttttttacgcagcggatgcccttccagccccattcccatctctgggaatatccacacacacacacacacaaacacacacacactcatacactacggacagtttagtctacccaattcacctgtaccacatgtctttggactgtgggggaaaccggagcacccggaggaaacccacgcaaaggcagggagaacatgcaaactccacacagaaacgccaactgagccgaggttcgacccagcgaccatcttgctgtgaggcgacagcactacctactgcgccactgcctcacccacaATACACACATATACTTTGTAAATAATCAATATGTGCATATTTGATTTCATATTTATATGTGGCtttggaaagtattcagaccccctaaAATTTCCAGTCTTTGTTATGTTTTATCcgtttgctaaaatcatttaagtaattttttcctcattaatgtccaCACAGCAGCCCGTATTGACAGAATAACACAGAATTGGTGAcagttttgcagatttattaaaaaagaaaaactgaaatatcacatggtgcgaagtattcagaccctttgctgtaACACTCATATATTTAAGTCaggtgctgtccatttcttcGGATCATCCTTGAGATAGTTCTACACCTTCGTTTGAGTCCggccacacacctgtctatataagacctTACGGCTCACAATGCTTGCCGGAGCAGTTGAGAATCATGAGGTCAGAGGAACCgcctgaagagctcagagacacaattgtggcaaggcacagatctggGCAAGTCTacaaaaacatttctgctgcactGGAAGTTCCtcagagcacagtggcctccataatccTGTTGATGTTTGGGATGAGCAGAAACCTTACTGGAGCTGGCTGTCCGGTCAAACTAAGCTATAAGGGAAGAAGAGCCTTGGTGAAAGAGGTAATGAAGAACCCAAAGATCACtgtggctgagctccagagatgcagtcAGGAGAGGGGAGAAAGTTGAAGAAAGTCAACAATCTCTGCAGCCGGAGTCTGAGCTTTATGGCAGAGTGGCCCAGCGGAAAGGCACATGCAAGCCTGCACGAAGGACTCCTCTCTGGTGAGAGAtaagattctctggtctgatgagaccaagatAGAACTTTTTGTCCTTATTTCTAAGCGGTATGTGTAGAGAAAACCTGGCACTGCTCATCTCCTGTCCAATACAGGcccaacagtgaagcatggtggtggcagcatcatactGTGAGGTGGTTTTAGCTGCAGGGACAGGACGACTGCTTGCAGTTGAGGGAAAAGATGAATGTGGCCAAGTACAGGGATATACTGGACTaaaaccttctccagagtgctcagAACCTCAGAATGGACCTcaggtttaccttccaacaagacaatgaccctgaaccaagcggcaacctcccgctctctctcgggaggccaatacggaagtaactgaaactgcaattcatcaaaattctgctagtcctggctccataacagAGCAAAAATTgtgcccactgttagaatggccaactttacagcagaaaaaaaggtgtttacagcctggtacaaagaaccaTTTTGGTTTataaagctaatattacccttcatgacaactgtgaggggggtgaatttttttataactcatcagtttcctttatattaggttatattaagcttgcataattaagggtgtggccacttgattgacagctaggtctcgctgtcgCTGTctcttcacctcagctgactccagCAGATTAGTCACTGATTTCggcatattcatcatatttttgttttgttttatgtggctttacacagtcagtttccttttgggattatttcctacaattatcagatgatatgggatgctgtgtgcacttaattgtgctcacaaaccattcacgtggcctccatttcccatgtgagtaaagttatatacttgtaaaccatctctatacatgtatttgttttatttaagatcatttatcatttataatgttctttagagctgtaatgcactccagaatctgtcagattgattagctgtaggctctagaatagtcatctgaagtgttgtcatacagtgttatgctggatttcatcaatagtcttgcatttactaacaaagactatatctgaagtgtttggaagtaattcgtaTTTTCCTGCTGTAGGAAAACAtaataagaacaatgtttagtagctcaatgtattacagcagtgtttttaaaagtctaaacactttattgtgtacagccaagcacaagtggctagaacacaaacgagtcgcaggtgatgaagtattaagcgttttcccaaagtaaagtctgtctaagccaggtccaagcaaaatgccagcatgcatctgtagctccactaactctccgcctctttgcccttgtttggtatcccgtcgtgggtgtgatgacgagcgaacaaaatggcgacggttggccgcgcctacttgtggcttcttttgcgctcttcagaaacctatgggtgacgtcacggatactacgtccatatgttttacagtctatgccctaaacacacagctaaaataactaAAGactggcttcacaacaactccgtGACTGTTTTTGAATGACCCCGCCAGACCAATGACCTAAACCCAATTGAGaacctaaaaatggctgtccaccaacgtttaccatccaacctgacagaactggagaggatctgcaaggaggaatggcagaCGATCCCCtaatccaggtgtgaaaaacttgttgcatctttGCCTGAAAGACTCACGGCTGTGTTAGATCAAACGGTGCTTCTGCTAAACtctgagcaaagggtctgaacaCTGAGgatcatgtgatatttcagtttttctttttaataaatctgcaaagatgtcaacaattctgtgttatTCTGTCAATATGGGCTGCTGCGTCACACCTGCCAACAGTCGAATCATAAAATCCGGGAGATTTTGTCCGGGGATGCGTgcgaagtgaagagcggggggagGGGGGC

Function

symbol description
loxl5b Predicted to enable protein-lysine 6-oxidase activity. Acts upstream of or within notochord morphogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in notochord and prechordal plate.

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030903 notochord development biological_process
GO:0018057 peptidyl-lysine oxidation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function
GO:0004720 protein-lysine 6-oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070818-3 Predicted to enable protein-lysine 6-oxidase activity. Acts upstream of or within notochord morphogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in notochord and prechordal plate.

Ensembl:

ensembl_id ENSDARG00000076904

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031659 False 1911 mRNA 0.47 7 56012016 56041890
TCONS_00031660 True 4675 mRNA 0.45 6 56012070 56040091

Neighbor

gene id symbol gene type direction distance location
XLOC_015976 nmrk2 coding upstream 21687 55982300 ~ 55990329 (+)
XLOC_015975 atcayb coding upstream 41046 55914699 ~ 55970970 (+)
XLOC_015974 NA coding upstream 227571 55782537 ~ 55784445 (+)
XLOC_015973 NA coding upstream 231979 55777822 ~ 55780037 (+)
XLOC_015972 klf2b coding upstream 338791 55665095 ~ 55673225 (+)
XLOC_015978 NA coding downstream 83113 56125003 ~ 56130443 (+)
XLOC_015979 pgpep1 coding downstream 98051 56139941 ~ 56162607 (+)
XLOC_015980 upf1 coding downstream 126729 56168619 ~ 56237133 (+)
XLOC_015981 NA coding downstream 130203 56172093 ~ 56172528 (+)
XLOC_015982 homer3a coding downstream 223901 56265791 ~ 56283159 (+)
XLOC_015971 NA non-coding upstream 408451 55603128 ~ 55603565 (+)
XLOC_015968 NA non-coding upstream 742726 55268020 ~ 55269290 (+)
XLOC_015960 CABZ01050280.1 non-coding upstream 1564303 54430632 ~ 54447713 (+)
XLOC_015983 NA non-coding downstream 282444 56324334 ~ 56335388 (+)
XLOC_015984 NA non-coding downstream 287651 56329541 ~ 56331424 (+)
XLOC_015986 CU469531.1 non-coding downstream 445778 56487668 ~ 56493661 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000075_00142446_00146058 LOXL5B coding CI01000075 null 141767 ~ 146058 (-)